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Nfya nuclear transcription factor Y subunit alpha [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100755500, updated on 8-Mar-2024

Summary

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Gene symbol
Nfya
Gene description
nuclear transcription factor Y subunit alpha
See related
Ensembl:ENSCGRG00015024862
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615227.1 (132349..153342, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (254884671..254906531)

NW_003615227.1Genomic Context describing neighboring genes Neighboring gene triggering receptor expressed on myeloid cells 2 Neighboring gene triggering receptor expressed on myeloid cells like 1 Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit alpha
Names
nuclear transcription factor Y, alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615227.1 Reference CriGri_1.0 Primary Assembly

    Range
    132349..153342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016980314.3 → XP_016835803.1  nuclear transcription factor Y subunit alpha isoform X7

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F908
    Conserved Domains (1) summary
    pfam02045
    Location:229 → 283
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  2. XM_016980313.3 → XP_016835802.1  nuclear transcription factor Y subunit alpha isoform X6

    UniProtKB/TrEMBL
    A0A061IQP7, A0A8C2LPR5
    Conserved Domains (1) summary
    pfam02045
    Location:234 → 289
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  3. XM_016980311.3 → XP_016835800.1  nuclear transcription factor Y subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F840

  4. XM_016980309.3 → XP_016835798.1  nuclear transcription factor Y subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A061IQP7, A0A8C2LNX7
    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  5. XM_016980310.3 → XP_016835799.1  nuclear transcription factor Y subunit alpha isoform X3

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7JC80

  6. XM_016980312.3 → XP_016835801.1  nuclear transcription factor Y subunit alpha isoform X5

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F7X6

  7. XM_003511758.5 → XP_003511806.1  nuclear transcription factor Y subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_003511806.1

    UniProtKB/TrEMBL
    A0A061IQP7, G3I9V5
    Conserved Domains (1) summary
    pfam02045
    Location:264 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  8. XM_027384078.2 → XP_027239879.1  nuclear transcription factor Y subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A061IQP7, G3I9V5

  9. XM_035461979.1 → XP_035317870.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  10. XM_016980315.3 → XP_016835804.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  11. XM_035461980.1 → XP_035317871.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  12. XM_027384080.2 → XP_027239881.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    254884671..254906531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027394525.2 → XP_027250326.1  nuclear transcription factor Y subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A061IQP7, G3I9V5

  2. XM_027394531.2 → XP_027250332.1  nuclear transcription factor Y subunit alpha isoform X5

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F7X6

  3. XM_027394529.2 → XP_027250330.1  nuclear transcription factor Y subunit alpha isoform X3

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7JC80
    Related
    ENSCGRP00015047906.1, ENSCGRT00015071414.1

  4. XM_027394528.2 → XP_027250329.1  nuclear transcription factor Y subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A061IQP7, A0A8C2LNX7
    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  5. XM_027394530.2 → XP_027250331.1  nuclear transcription factor Y subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F840
    Related
    ENSCGRP00015039476.1, ENSCGRT00015066696.1

  6. XM_027394533.2 → XP_027250334.1  nuclear transcription factor Y subunit alpha isoform X7

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F908

  7. XM_027394532.2 → XP_027250333.1  nuclear transcription factor Y subunit alpha isoform X6

    UniProtKB/TrEMBL
    A0A061IQP7, A0A8C2LPR5
    Related
    ENSCGRP00015033023.1, ENSCGRT00015040283.2
    Conserved Domains (1) summary
    pfam02045
    Location:234 → 289
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  8. XM_027394526.2 → XP_027250327.1  nuclear transcription factor Y subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A061IQP7, G3I9V5

  9. XM_035450557.1 → XP_035306448.1  nuclear transcription factor Y subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A061IQP7, A0A8C2LNX7
    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  10. XM_035450559.1 → XP_035306450.1  nuclear transcription factor Y subunit alpha isoform X6

    UniProtKB/TrEMBL
    A0A061IQP7, A0A8C2LPR5
    Conserved Domains (1) summary
    pfam02045
    Location:234 → 289
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  11. XM_027394527.2 → XP_027250328.1  nuclear transcription factor Y subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A061IQP7, G3I9V5

  12. XM_035450558.1 → XP_035306449.1  nuclear transcription factor Y subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A061IQP7, A0A8C2LNX7
    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  13. XM_035450560.1 → XP_035306451.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  14. XM_027394534.2 → XP_027250335.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  15. XM_035450561.1 → XP_035306452.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  16. XM_027394535.2 → XP_027250336.1  nuclear transcription factor Y subunit alpha isoform X8

    UniProtKB/TrEMBL
    A0A061IQP7, A0A9J7F3R8
    Conserved Domains (1) summary
    pfam02045
    Location:203 → 258
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Nucleotide Protein Strain
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