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LOC100703522 nuclear factor of activated T-cells, cytoplasmic 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703522, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100703522
Gene description
nuclear factor of activated T-cells, cytoplasmic 1
See related
Ensembl:ENSONIG00000007307
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
nfatc1
Expression
Broad expression in heart (RPKM 4.0), whole embryo (RPKM 3.1) and 7 other tissues See more
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Genomic context

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Location:
chromosome: LG11
Exon count:
11
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG11 NC_031976.2 (13482486..13542526)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG11 NC_031976.1 (33701244..33761290)

Linkage Group LG11 - NC_031976.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102082467 Neighboring gene spalt-like transcription factor 3a Neighboring gene riboflavin transporter 2 Neighboring gene microtubule actin crosslinking factor 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcineurin-NFAT signaling cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor of activated T-cells, cytoplasmic 1
Names
nuclear factor of activated T-cells 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031976.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    13482486..13542526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003443641.5 → XP_003443689.2  nuclear factor of activated T-cells, cytoplasmic 1 isoform X1

    UniProtKB/TrEMBL
    I3JK23
    Related
    ENSONIP00000009217.1, ENSONIT00000009222.2
    Conserved Domains (2) summary
    cd07881
    Location:416 → 590
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    cl15674
    Location:595 → 695
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

  2. XM_005450666.4 → XP_005450723.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X2

    UniProtKB/TrEMBL
    I3JK24
    Related
    ENSONIP00000009218.2, ENSONIT00000009223.2
    Conserved Domains (2) summary
    cd07881
    Location:409 → 583
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    cl15674
    Location:588 → 688
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
Nucleotide Protein
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