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myb v-myb avian myeloblastosis viral oncogene homolog [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100700889, updated on 8-Mar-2024

Summary

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Gene symbol
myb
Gene description
v-myb avian myeloblastosis viral oncogene homolog
See related
Ensembl:ENSONIG00000000469
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in skin (RPKM 9.4), whole embryo (RPKM 7.9) and 4 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
15
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG15 NC_031980.2 (7987618..7995940, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG15 NC_031980.1 (31443618..31451136)

Linkage Group LG15 - NC_031980.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109194878 Neighboring gene phosphodiesterase 7B Neighboring gene HBS1-like translational GTPase Neighboring gene aldehyde dehydrogenase 8 family, member A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional activator Myb
Names
MYB proto-oncogene, transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031980.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    7987618..7995940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003440724.5 → XP_003440772.1  transcriptional activator Myb isoform X2

    UniProtKB/TrEMBL
    I3IVF8
    Conserved Domains (4) summary
    smart00717
    Location:92 → 140
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:92 → 138
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam07988
    Location:263 → 301
    LMSTEN; LMSTEN motif
    pfam09316
    Location:392 → 520
    Cmyb_C; C-myb, C-terminal

  2. XM_005449573.4 → XP_005449630.1  transcriptional activator Myb isoform X1

    UniProtKB/TrEMBL
    I3IVF8, I3IVF9
    Related
    ENSONIP00000000599.2, ENSONIT00000000598.2
    Conserved Domains (4) summary
    smart00717
    Location:92 → 140
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:92 → 138
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam07988
    Location:263 → 301
    LMSTEN; LMSTEN motif
    pfam09316
    Location:392 → 520
    Cmyb_C; C-myb, C-terminal
Nucleotide Protein
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