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zbtb25 zinc finger and BTB domain containing 25 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100696984, updated on 8-Mar-2024

Summary

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Gene symbol
zbtb25
Gene description
zinc finger and BTB domain containing 25
See related
Ensembl:ENSONIG00000042861
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in testis (RPKM 2.3), brain (RPKM 1.6) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
6
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG15 NC_031980.2 (25895777..25904205)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG15 NC_031980.1 (11507582..11512977)

Linkage Group LG15 - NC_031980.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112842469 Neighboring gene zinc finger and BTB domain-containing protein 1 Neighboring gene uncharacterized LOC102080513 Neighboring gene C-1-tetrahydrofolate synthase, cytoplasmic Neighboring gene zinc finger MYM-type protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031980.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    25895777..25904205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003446708.5 → XP_003446756.1  zinc finger and BTB domain-containing protein 25 isoform X2

    See identical proteins and their annotated locations for XP_003446756.1

    UniProtKB/TrEMBL
    A0A669B8P4
    Related
    ENSONIP00000031816.1, ENSONIT00000047545.1
    Conserved Domains (3) summary
    smart00225
    Location:25 → 83
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:351 → 371
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 86
    BTB; BTB/POZ domain

  2. XM_005452508.4 → XP_005452565.1  zinc finger and BTB domain-containing protein 25 isoform X2

    See identical proteins and their annotated locations for XP_005452565.1

    UniProtKB/TrEMBL
    A0A669B8P4
    Conserved Domains (3) summary
    smart00225
    Location:25 → 83
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:351 → 371
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 86
    BTB; BTB/POZ domain

  3. XM_005452509.4 → XP_005452566.1  zinc finger and BTB domain-containing protein 25 isoform X2

    See identical proteins and their annotated locations for XP_005452566.1

    UniProtKB/TrEMBL
    A0A669B8P4
    Conserved Domains (3) summary
    smart00225
    Location:25 → 83
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:351 → 371
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 86
    BTB; BTB/POZ domain

  4. XM_005452507.4 → XP_005452564.1  zinc finger and BTB domain-containing protein 25 isoform X2

    See identical proteins and their annotated locations for XP_005452564.1

    UniProtKB/TrEMBL
    A0A669B8P4
    Conserved Domains (3) summary
    smart00225
    Location:25 → 83
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:351 → 371
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 86
    BTB; BTB/POZ domain

  5. XM_019345573.2 → XP_019201118.2  zinc finger and BTB domain-containing protein 25 isoform X1

    Conserved Domains (2) summary
    sd00017
    Location:369 → 389
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:32 → 119
    BTB; BTB/POZ domain

  6. XM_005452510.4 → XP_005452567.1  zinc finger and BTB domain-containing protein 25 isoform X2

    See identical proteins and their annotated locations for XP_005452567.1

    UniProtKB/TrEMBL
    A0A669B8P4
    Conserved Domains (3) summary
    smart00225
    Location:25 → 83
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:351 → 371
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 86
    BTB; BTB/POZ domain
Nucleotide Protein
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