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foxa1 forkhead box A1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100696403, updated on 8-Mar-2024

Summary

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Gene symbol
foxa1
Gene description
forkhead box A1
See related
Ensembl:ENSONIG00000034290
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in brain (RPKM 2.5), whole embryo (RPKM 0.4) and 1 other tissue See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
2
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (29685924..29692385, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (362065..368361)

Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene TNF receptor-associated factor 3 Neighboring gene mirror-image polydactyly 1 Neighboring gene uncharacterized LOC112843116 Neighboring gene uncharacterized LOC112843114 Neighboring gene uncharacterized LOC112843123 Neighboring gene C-type lectin domain containing 14A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 3-alpha
Names
forkhead box protein A1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    29685924..29692385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003457203.5 → XP_003457251.1  hepatocyte nuclear factor 3-alpha

    UniProtKB/TrEMBL
    A0A669DD38
    Related
    ENSONIP00000056230.1, ENSONIT00000037455.1
    Conserved Domains (3) summary
    smart00339
    Location:149 → 237
    FH; FORKHEAD
    pfam08430
    Location:22 → 148
    Forkhead_N; Forkhead N-terminal region
    pfam09354
    Location:347 → 399
    HNF_C; HNF3 C-terminal domain
Nucleotide Protein
Heading Accession and Version

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