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alx4a ALX homeobox 4a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100695379, updated on 8-Mar-2024

Summary

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Gene symbol
alx4a
Gene description
ALX homeobox 4a
See related
Ensembl:ENSONIG00000006176
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in skin (RPKM 2.7), whole embryo (RPKM 2.1) and 8 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG1
Exon count:
5
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG1 NC_031965.2 (19412567..19433723, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG1 NC_031965.1 (17997858..18018216, complement)

Linkage Group LG1 - NC_031965.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102076016 Neighboring gene diacylglycerol lipase, alpha Neighboring gene exostosin glycosyltransferase 2 Neighboring gene cell cycle associated protein 1a Neighboring gene nucleobindin 2a Neighboring gene pleckstrin homology domain containing, family A member 7b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein aristaless-like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031965.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    19412567..19433723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005466978.4 → XP_005467035.1  homeobox protein aristaless-like 4

    UniProtKB/TrEMBL
    A0A669DU98, I3JFZ1
    Related
    ENSONIP00000064410.1, ENSONIT00000068382.1
    Conserved Domains (2) summary
    pfam00046
    Location:183 → 235
    Homeobox; Homeobox domain
    pfam03826
    Location:349 → 366
    OAR; OAR domain
Nucleotide Protein
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