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RBM44 RNA binding motif protein 44 [ Canis lupus familiaris (dog) ]

Gene ID: 100686260, updated on 8-Mar-2024

Summary

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Official Symbol
RBM44provided by VGNC
Official Full Name
RNA binding motif protein 44provided by VGNC
Primary source
VGNC:VGNC:59091
See related
Ensembl:ENSCAFG00845029315
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (48764889..48805968)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (48875810..48916873)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (48661612..48702183)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (48640712..48681541)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (48428987..48470051)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene LRR binding FLII interacting protein 1 Neighboring gene uncharacterized LOC119865975 Neighboring gene uncharacterized LOC102156302 Neighboring gene TATA box-binding protein-associated factor RNA polymerase I subunit D-like Neighboring gene receptor activity modifying protein 1 Neighboring gene uncharacterized LOC111092354

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    48764889..48805968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038435912.1 → XP_038291840.1  RNA-binding protein 44 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NV32, A0A8I3Q1A2
    Related
    ENSCAFP00845040751.1, ENSCAFT00845051940.1
    Conserved Domains (2) summary
    TIGR01622
    Location:788 → 989
    SF-CC1; splicing factor, CC1-like family
    cl17169
    Location:825 → 900
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038435914.1 → XP_038291842.1  RNA-binding protein 44 isoform X3

  3. XM_038435913.1 → XP_038291841.1  RNA-binding protein 44 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NPQ0, A0A8C0T7Z7
    Conserved Domains (2) summary
    TIGR01622
    Location:729 → 930
    SF-CC1; splicing factor, CC1-like family
    cl17169
    Location:766 → 841
    RRM_SF; RNA recognition motif (RRM) superfamily

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    48640712..48681541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038510833.1 → XP_038366761.1  RNA-binding protein 44 isoform X1

  2. XM_038510835.1 → XP_038366763.1  RNA-binding protein 44 isoform X3

  3. XM_038510834.1 → XP_038366762.1  RNA-binding protein 44 isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    48428987..48470051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638576.1 → XP_038494504.1  RNA-binding protein 44 isoform X1

    Conserved Domains (2) summary
    TIGR01622
    Location:788 → 989
    SF-CC1; splicing factor, CC1-like family
    cl17169
    Location:825 → 900
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038638578.1 → XP_038494506.1  RNA-binding protein 44 isoform X3

  3. XM_038638577.1 → XP_038494505.1  RNA-binding protein 44 isoform X2

    Conserved Domains (2) summary
    TIGR01622
    Location:729 → 930
    SF-CC1; splicing factor, CC1-like family
    cl17169
    Location:766 → 841
    RRM_SF; RNA recognition motif (RRM) superfamily

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    48661612..48702183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038574335.1 → XP_038430263.1  RNA-binding protein 44 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T763

  2. XM_038574337.1 → XP_038430265.1  RNA-binding protein 44 isoform X3

  3. XM_038574336.1 → XP_038430264.1  RNA-binding protein 44 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7Z7

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    48875810..48916873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003433365.4 → XP_003433413.1  RNA-binding protein 44 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NV32, A0A8I3Q1A2
    Conserved Domains (2) summary
    TIGR01622
    Location:788 → 989
    SF-CC1; splicing factor, CC1-like family
    cl17169
    Location:825 → 900
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_005635922.3 → XP_005635979.1  RNA-binding protein 44 isoform X3

  3. XM_005635921.3 → XP_005635978.1  RNA-binding protein 44 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NPQ0, A0A8C0T7Z7
    Conserved Domains (2) summary
    TIGR01622
    Location:729 → 930
    SF-CC1; splicing factor, CC1-like family
    cl17169
    Location:766 → 841
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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