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PSMD1 proteasome 26S subunit, non-ATPase 1 [ Canis lupus familiaris (dog) ]

Gene ID: 100683530, updated on 8-Mar-2024

Summary

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Official Symbol
PSMD1provided by VGNC
Official Full Name
proteasome 26S subunit, non-ATPase 1provided by VGNC
Primary source
VGNC:VGNC:45105
See related
Ensembl:ENSCAFG00845022206
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PSMD1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
25
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (43260096..43353296)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (43563423..43656580)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (43187103..43280333)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (43188912..43281761)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (43031707..43124879)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092446 Neighboring gene cofilin-1-like Neighboring gene chromosome 25 C2orf72 homolog Neighboring gene uncharacterized LOC119865961 Neighboring gene 5-hydroxytryptamine receptor 2B Neighboring gene uncharacterized LOC111092481 Neighboring gene uncharacterized LOC111092482

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in proteasome storage granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 1; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 1
Names
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    43260096..43353296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038435753.1 → XP_038291681.1  26S proteasome non-ATPase regulatory subunit 1

    UniProtKB/TrEMBL
    A0A8C0P413, A0A8C0TPY7, A0A8I3PBB2
    Related
    ENSCAFP00845030922.1, ENSCAFT00845039461.1
    Conserved Domains (2) summary
    COG5116
    Location:2 → 934
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    sd00044
    Location:601 → 624
    HEAT; HEAT repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    43188912..43281761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038510681.1 → XP_038366609.1  LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    43031707..43124879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638459.1 → XP_038494387.1  26S proteasome non-ATPase regulatory subunit 1

    Conserved Domains (2) summary
    COG5116
    Location:2 → 934
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    sd00044
    Location:601 → 624
    HEAT; HEAT repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    43187103..43280333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038574162.1 → XP_038430090.1  26S proteasome non-ATPase regulatory subunit 1

    UniProtKB/TrEMBL
    A0A8C0P413, A0A8C0TPY7, A0A8I3PBB2
    Conserved Domains (2) summary
    COG5116
    Location:2 → 934
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    sd00044
    Location:601 → 624
    HEAT; HEAT repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    43563423..43656580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038458290.1 → XP_038314218.1  26S proteasome non-ATPase regulatory subunit 1

    UniProtKB/TrEMBL
    A0A8C0P413, A0A8C0TPY7, A0A8I3PBB2
    Conserved Domains (2) summary
    COG5116
    Location:2 → 934
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    sd00044
    Location:601 → 624
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
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