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MYO1C myosin IC [ Sus scrofa (pig) ]

Gene ID: 100622921, updated on 8-Mar-2024

Summary

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Official Symbol
MYO1Cprovided by VGNC
Official Full Name
myosin ICprovided by VGNC
Primary source
VGNC:VGNC:90526
See related
Ensembl:ENSSSCG00000021821
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 65.6), lung (RPKM 53.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
36
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (47691252..47715670, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (49785597..49802342, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene CRK proto-oncogene, adaptor protein Neighboring gene uncharacterized LOC110255905 Neighboring gene inositol polyphosphate-5-phosphatase K Neighboring gene phosphatidylinositol transfer protein alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microvillus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
unconventional myosin-Ic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    47691252..47715670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021067559.1 → XP_020923218.1  unconventional myosin-Ic isoform X4

    UniProtKB/TrEMBL
    A0A480I6L4, A0A480PMU9, A0A5G2RI50, A0A8D0IWP4, A0A8D0UZV8
    Related
    ENSSSCP00000071167.2, ENSSSCT00000088741.2
    Conserved Domains (3) summary
    smart00015
    Location:756 → 776
    IQ; Calmodulin-binding motif
    cd01378
    Location:62 → 718
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:874 → 1040
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  2. XM_021067553.1 → XP_020923212.1  unconventional myosin-Ic isoform X1

    UniProtKB/TrEMBL
    A0A480PMU9, A0A8D0UZV8
    Conserved Domains (3) summary
    smart00015
    Location:756 → 776
    IQ; Calmodulin-binding motif
    cd01378
    Location:62 → 718
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:874 → 1080
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  3. XM_005657016.3 → XP_005657073.1  unconventional myosin-Ic isoform X6

    UniProtKB/TrEMBL
    A0A8D1V3J2, A0A8D1ZRD4
    Related
    ENSSSCP00000023920.4, ENSSSCT00000027674.4
    Conserved Domains (4) summary
    smart00015
    Location:721 → 741
    IQ; Calmodulin-binding motif
    smart00242
    Location:8 → 696
    MYSc; Myosin. Large ATPases
    cd01378
    Location:27 → 683
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:839 → 1006
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  4. XM_021067555.1 → XP_020923214.1  unconventional myosin-Ic isoform X3

    UniProtKB/TrEMBL
    A0A8D1V3J2
    Conserved Domains (3) summary
    smart00015
    Location:721 → 741
    IQ; Calmodulin-binding motif
    cd01378
    Location:27 → 683
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:839 → 1045
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  5. XM_021067556.1 → XP_020923215.1  unconventional myosin-Ic isoform X3

    UniProtKB/TrEMBL
    A0A8D1V3J2
    Conserved Domains (3) summary
    smart00015
    Location:721 → 741
    IQ; Calmodulin-binding motif
    cd01378
    Location:27 → 683
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:839 → 1045
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  6. XM_021067557.1 → XP_020923216.1  unconventional myosin-Ic isoform X3

    UniProtKB/TrEMBL
    A0A8D1V3J2
    Conserved Domains (3) summary
    smart00015
    Location:721 → 741
    IQ; Calmodulin-binding motif
    cd01378
    Location:27 → 683
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:839 → 1045
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  7. XM_021067558.1 → XP_020923217.1  unconventional myosin-Ic isoform X3

    UniProtKB/TrEMBL
    A0A8D1V3J2
    Conserved Domains (3) summary
    smart00015
    Location:721 → 741
    IQ; Calmodulin-binding motif
    cd01378
    Location:27 → 683
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:839 → 1045
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  8. XM_021067554.1 → XP_020923213.1  unconventional myosin-Ic isoform X2

    UniProtKB/TrEMBL
    A0A8D0LKE4
    Conserved Domains (3) summary
    smart00015
    Location:737 → 757
    IQ; Calmodulin-binding motif
    cd01378
    Location:43 → 699
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:855 → 1061
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  9. XM_021067560.1 → XP_020923219.1  unconventional myosin-Ic isoform X5

    UniProtKB/TrEMBL
    A0A286ZL61, A0A480I3P3, A0A4X1U654, A0A8D0LKE4
    Related
    ENSSSCP00000032181.2, ENSSSCT00000050207.3
    Conserved Domains (3) summary
    smart00015
    Location:737 → 757
    IQ; Calmodulin-binding motif
    cd01378
    Location:43 → 699
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:855 → 1021
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding
Nucleotide Protein
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