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ELL2 elongation factor for RNA polymerase II 2 [ Sus scrofa (pig) ]

Gene ID: 100523777, updated on 8-Mar-2024

Summary

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Official Symbol
ELL2provided by VGNC
Official Full Name
elongation factor for RNA polymerase II 2provided by VGNC
Primary source
VGNC:VGNC:87649
See related
Ensembl:ENSSSCG00000014168
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 9.2), liver (RPKM 8.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ELL2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (102518605..102591416, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (106402543..106475286, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene Rho related BTB domain containing 3 Neighboring gene glutaredoxin Neighboring gene uncharacterized LOC106508433 Neighboring gene proprotein convertase subtilisin/kexin type 1 Neighboring gene uncharacterized LOC110259691 Neighboring gene calpastatin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase II elongation factor ELL2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    102518605..102591416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003123796.5 → XP_003123844.2  RNA polymerase II elongation factor ELL2

    UniProtKB/TrEMBL
    A0A480JTG5, A0A4X1TK81, A0A8D0NBL7
    Related
    ENSSSCP00000080686.1, ENSSSCT00000102858.1
    Conserved Domains (2) summary
    pfam07303
    Location:535 → 632
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:11 → 289
    ELL; RNA polymerase II elongation factor ELL
Nucleotide Protein
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