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RBBP6 RB binding protein 6, ubiquitin ligase [ Sus scrofa (pig) ]

Gene ID: 100521783, updated on 8-Mar-2024

Summary

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Official Symbol
RBBP6provided by VGNC
Official Full Name
RB binding protein 6, ubiquitin ligaseprovided by VGNC
Primary source
VGNC:VGNC:92136
See related
Ensembl:ENSSSCG00000007830
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 16.9), lung (RPKM 15.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018084874.1 (847391..880538, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (22536840..22571131, complement)

NW_018084874.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 5 member 11 Neighboring gene trinucleotide repeat containing adaptor 6A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RBBP6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NW_018084874.1 Reference Sscrofa11.1 Primary Assembly

    Range
    847391..880538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021081347.1 → XP_020937006.1  E3 ubiquitin-protein ligase RBBP6 isoform X1

    UniProtKB/TrEMBL
    A0A8D0I9F0
    Related
    ENSSSCP00000069050.1, ENSSSCT00000076544.2
    Conserved Domains (2) summary
    cl26511
    Location:1042 → 1691
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26688
    Location:2 → 457
    DWNN; DWNN domain

  2. XM_005662074.3 → XP_005662131.1  E3 ubiquitin-protein ligase RBBP6 isoform X4

    UniProtKB/TrEMBL
    A0A287A5U1, A0A8D0IC98, A0A8D0S3H7
    Conserved Domains (2) summary
    cl26511
    Location:970 → 1619
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26688
    Location:2 → 419
    DWNN; DWNN domain

  3. XM_021081348.1 → XP_020937007.1  E3 ubiquitin-protein ligase RBBP6 isoform X2

    UniProtKB/TrEMBL
    A0A8D0IC98
    Conserved Domains (2) summary
    cl26511
    Location:1008 → 1657
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26688
    Location:2 → 457
    DWNN; DWNN domain

  4. XM_021081346.1 → XP_020937005.1  E3 ubiquitin-protein ligase RBBP6 isoform X1

    UniProtKB/TrEMBL
    A0A8D0I9F0
    Conserved Domains (2) summary
    cl26511
    Location:1042 → 1691
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26688
    Location:2 → 457
    DWNN; DWNN domain

  5. XM_003124540.6 → XP_003124588.3  E3 ubiquitin-protein ligase RBBP6 isoform X3

    See identical proteins and their annotated locations for XP_003124588.3

    UniProtKB/TrEMBL
    A0A8D0I9F0, A0A8D0S316, K9IVT3
    Related
    ENSSSCP00000033098.1, ENSSSCT00000051079.3
    Conserved Domains (5) summary
    pfam09528
    Location:981 → 1502
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    smart00184
    Location:259 → 299
    RING; Ring finger
    COG5222
    Location:2 → 419
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam08783
    Location:4 → 75
    DWNN; DWNN domain
    pfam13696
    Location:156 → 176
    zf-CCHC_2; Zinc knuckle

  6. XM_021081349.1 → XP_020937008.1  E3 ubiquitin-protein ligase RBBP6 isoform X4

    UniProtKB/TrEMBL
    A0A287A5U1, A0A8D0IC98, A0A8D0S3H7
    Related
    ENSSSCP00000039311.1, ENSSSCT00000061233.3
    Conserved Domains (2) summary
    cl26511
    Location:970 → 1619
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26688
    Location:2 → 419
    DWNN; DWNN domain
Nucleotide Protein Strain
Heading Accession and Version

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