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ARPP21 cAMP regulated phosphoprotein 21 [ Sus scrofa (pig) ]

Gene ID: 100512986, updated on 8-Mar-2024

Summary

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Official Symbol
ARPP21provided by VGNC
Official Full Name
cAMP regulated phosphoprotein 21provided by VGNC
Primary source
VGNC:VGNC:85541
See related
Ensembl:ENSSSCG00000011238
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in longissimus dorsi muscle (RPKM 1.5), psoas major muscle (RPKM 1.4) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ARPP21 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (20955414..21088424)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (22754689..22908209)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106505563 Neighboring gene uncharacterized LOC110256565 Neighboring gene microRNA mir-128-2 Neighboring gene uncharacterized LOC110256567 Neighboring gene uncharacterized LOC100737115 Neighboring gene SH3 and cysteine rich domain Neighboring gene LRR binding FLII interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cAMP-regulated phosphoprotein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    20955414..21088424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005669338.3 → XP_005669395.2  LOW QUALITY PROTEIN: cAMP-regulated phosphoprotein 21

    UniProtKB/TrEMBL
    A0A8D1HVL4
    Related
    ENSSSCP00000011986.5, ENSSSCT00000012305.5
    Conserved Domains (4) summary
    cd02642
    Location:163 → 224
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam12752
    Location:245 → 300
    SUZ; SUZ domain
    cl25764
    Location:650 → 790
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:425 → 668
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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Gene LinkOut

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