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BCL11A BCL11 transcription factor A [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100481239, updated on 8-Mar-2024

Summary

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Gene symbol
BCL11A
Gene description
BCL11 transcription factor A
See related
Ensembl:ENSAMEG00000015813
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See BCL11A in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 4 NC_048221.1 (84536239..84636158, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217441.1 (155528..247883)

Chromosome 4 - NC_048221.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117801975 Neighboring gene cytochrome c oxidase subunit 5B, mitochondrial-like Neighboring gene uncharacterized LOC109489208 Neighboring gene uncharacterized LOC117801976 Neighboring gene small nuclear ribonucleoprotein E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of dendrite development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-cell lymphoma/leukemia 11A
Names
B cell CLL/lymphoma 11A
BAF chromatin remodeling complex subunit BCL11A
BCL11A, BAF complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048221.1 Reference ASM200744v2 Primary Assembly

    Range
    84536239..84636158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034659180.1 → XP_034515071.1  B-cell lymphoma/leukemia 11A isoform X6

    UniProtKB/TrEMBL
    G1MBF8

  2. XM_034659177.1 → XP_034515068.1  B-cell lymphoma/leukemia 11A isoform X3

    UniProtKB/TrEMBL
    G1MBF8
    Related
    ENSAMEP00000016686.2, ENSAMET00000017375.2
    Conserved Domains (3) summary
    sd00019
    Location:377 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:376 → 397
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:389 → 414
    zf-H2C2_2; Zinc-finger double domain

  3. XM_034659179.1 → XP_034515070.1  B-cell lymphoma/leukemia 11A isoform X5

    UniProtKB/TrEMBL
    A0A7N5JDI7, A0A7N5KN95
    Related
    ENSAMEP00000042671.1, ENSAMET00000047119.1

  4. XM_034659175.1 → XP_034515066.1  B-cell lymphoma/leukemia 11A isoform X1

    UniProtKB/TrEMBL
    G1MBF8
    Conserved Domains (3) summary
    sd00017
    Location:742 → 762
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:741 → 762
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:389 → 414
    zf-H2C2_2; Zinc-finger double domain

  5. XM_034659176.1 → XP_034515067.1  B-cell lymphoma/leukemia 11A isoform X2

    UniProtKB/TrEMBL
    G1MBF8

  6. XM_034659174.1 → XP_034515065.1  B-cell lymphoma/leukemia 11A isoform X1

    UniProtKB/TrEMBL
    G1MBF8
    Conserved Domains (3) summary
    sd00017
    Location:742 → 762
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:741 → 762
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:389 → 414
    zf-H2C2_2; Zinc-finger double domain

  7. XM_034659178.1 → XP_034515069.1  B-cell lymphoma/leukemia 11A isoform X4

    Conserved Domains (3) summary
    sd00017
    Location:592 → 612
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:591 → 612
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:239 → 264
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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