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OGDHL oxoglutarate dehydrogenase L [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100473974, updated on 8-Mar-2024

Summary

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Gene symbol
OGDHL
Gene description
oxoglutarate dehydrogenase L
Locus tag
PANDA_015912
See related
Ensembl:ENSAMEG00000007386
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 6 NC_048223.1 (90197119..90226609, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218349.1 (78938..107262, complement)

Chromosome 6 - NC_048223.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM14-like Neighboring gene chromosome 6 C10orf53 homolog Neighboring gene poly(ADP-ribose) glycohydrolase Neighboring gene small nucleolar RNA SNORA74 Neighboring gene translocase of inner mitochondrial membrane 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate dehydrogenase-like, mitochondrial
Names
oxoglutarate dehydrogenase like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048223.1 Reference ASM200744v2 Primary Assembly

    Range
    90197119..90226609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019806996.2 → XP_019662555.1  2-oxoglutarate dehydrogenase-like, mitochondrial

    UniProtKB/TrEMBL
    D2HUG6, G1LLR3

  2. XM_019806995.2 → XP_019662554.1  2-oxoglutarate dehydrogenase-like, mitochondrial

    UniProtKB/TrEMBL
    D2HUG6, G1LLR3
    Related
    ENSAMEP00000033079.1, ENSAMET00000049901.1

  3. XM_002926234.4 → XP_002926280.1  2-oxoglutarate dehydrogenase-like, mitochondrial

    See identical proteins and their annotated locations for XP_002926280.1

    UniProtKB/TrEMBL
    D2HUG6, G1LLR3
    Related
    ENSAMEP00000007885.2, ENSAMET00000008213.2
    Conserved Domains (5) summary
    PRK09404
    Location:46 → 997
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
    cd02016
    Location:247 → 510
    TPP_E1_OGDC_like; Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of ...
    pfam02779
    Location:632 → 846
    Transket_pyr; Transketolase, pyrimidine binding domain
    pfam16078
    Location:46 → 76
    2-oxogl_dehyd_N; 2-oxoglutarate dehydrogenase N-terminus
    pfam16870
    Location:853 → 996
    OxoGdeHyase_C; 2-oxoglutarate dehydrogenase C-terminal

  4. XM_019806997.2 → XP_019662556.1  2-oxoglutarate dehydrogenase-like, mitochondrial

    UniProtKB/TrEMBL
    D2HUG6, G1LLR3

  5. XM_019806998.2 → XP_019662557.1  2-oxoglutarate dehydrogenase-like, mitochondrial

    UniProtKB/TrEMBL
    D2HUG6, G1LLR3

RNA

  1. XR_002144067.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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