U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ostm1 osteoclastogenesis associated transmembrane protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 100320445, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ostm1provided by ZNC
Official Full Name
osteoclastogenesis associated transmembrane protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-270
See related
Ensembl:ENSDARG00000069808 AllianceGenome:ZFIN:ZDB-GENE-081104-270
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa04a09; wu:fa04a09; si:ch73-257c13.3
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 5. Orthologous to human OSTM1 (osteoclastogenesis associated transmembrane protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (32478107..32491036)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (32575238..32584956)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene sorting nexin 3 Neighboring gene nuclear receptor subfamily 2, group E, member 1 Neighboring gene si:ch73-257c13.2 Neighboring gene SEC63 homolog, protein translocation regulator

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Role of Ostm1 Cytosolic Complex with Kinesin 5B in Intracellular Dispersion and Trafficking. Pandruvada SN, et al. Mol Cell Biol, 2016 Feb 1. PMID 26598607, Free PMC Article
  2. Stat5b Regulates Sexually Dimorphic Gene Expression in Zebrafish Liver. Huang P, et al. Front Physiol, 2018. PMID 29904357, Free PMC Article
  3. FOXO genes in channel catfish and their response after bacterial infection. Gao L, et al. Dev Comp Immunol, 2019 Aug. PMID 30905685
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
osteopetrosis-associated transmembrane protein 1
Names
osteopetrosis associated transmembrane protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386310.1 → NP_001373239.1  osteopetrosis-associated transmembrane protein 1

    Status: VALIDATED

    Source sequence(s)
    CU207298
    UniProtKB/TrEMBL
    A0A8M1RHW9
    Conserved Domains (1) summary
    pfam09777
    Location:73 → 295
    OSTMP1; Osteopetrosis-associated transmembrane protein 1 precursor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    32478107..32491036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002665742.6 → XP_002665788.2  osteopetrosis-associated transmembrane protein 1

    Related
    ENSDARP00000119392.2, ENSDART00000145269.3
    Conserved Domains (1) summary
    pfam09777
    Location:73 → 295
    OSTMP1; Osteopetrosis-associated transmembrane protein 1 precursor
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous