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SNAP-ALPHA alpha-soluble NSF attachment protein [ Vitis vinifera (wine grape) ]

Gene ID: 100232837, updated on 23-Oct-2023

Summary

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Gene symbol
SNAP-ALPHA
Gene description
alpha-soluble NSF attachment protein
Locus tag
VIT_00032725001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (1235374..1241019, complement)
102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (1243160..1248805, complement)

Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene senescence associated gene 20 Neighboring gene uncharacterized LOC100248412 Neighboring gene amino acid transporter AVT6C Neighboring gene uncharacterized LOC100243287 Neighboring gene ribosome biogenesis protein NOP53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence of grapevine (Vitis vinifera) cDNA similar to SNAP proteins. Matsumoto S, et al. DNA Seq, 1997. PMID 9522131
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables soluble NSF attachment protein activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SNARE complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vacuolar membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-soluble NSF attachment protein
Names
N-ethylmaleimide-sensitive factor attachment protein alpha
alpha-SNAP

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281126.1 → NP_001268055.1  alpha-soluble NSF attachment protein

    See identical proteins and their annotated locations for NP_001268055.1

    Status: PROVISIONAL

    Source sequence(s)
    AB001375
    UniProtKB/Swiss-Prot
    P93798
    Conserved Domains (3) summary
    sd00006
    Location:73 → 100
    TPR; TPR repeat [structural motif]
    cd15832
    Location:20 → 278
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
    pfam14938
    Location:20 → 279
    SNAP; Soluble NSF attachment protein, SNAP

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

    Range
    1235374..1241019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93798.1 GenPept UniProtKB/Swiss-Prot:P93798

Gene LinkOut

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Molecular Biology Databases