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PPP4C protein phosphatase 4 catalytic subunit [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100173513, updated on 26-Mar-2024

Summary

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Gene symbol
PPP4C
Gene description
protein phosphatase 4 catalytic subunit
Locus tag
CR201_G0034411
See related
Ensembl:ENSPPYG00000007243
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 18 NC_072003.2 (32061126..32070503, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 16 NC_072001.1 (31471929..31481306, complement)

Chromosome 18 - NC_072003.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103892649 Neighboring gene yippee like 3 Neighboring gene T-box transcription factor 6 Neighboring gene aldolase, fructose-bisphosphate A Neighboring gene keratin-associated protein 10-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469P084

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase 4 catalytic subunit
Names
PP4C
pp4
protein phosphatase 4 (formerly X), catalytic subunit
NP_001126524.1
XP_024088833.1
XP_024088834.1
XP_024088835.1
XP_024088836.1
XP_063573160.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001133052.1 → NP_001126524.1  serine/threonine-protein phosphatase 4 catalytic subunit

    See identical proteins and their annotated locations for NP_001126524.1

    Status: PROVISIONAL

    Source sequence(s)
    CR860480
    UniProtKB/Swiss-Prot
    Q5R6K8
    UniProtKB/TrEMBL
    A0A2J8TJZ8, A0A2J8TK62
    Related
    ENSPPYP00000008189.2, ENSPPYT00000008526.2
    Conserved Domains (1) summary
    cd07415
    Location:6 → 290
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072003.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    32061126..32070503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024233066.2 → XP_024088834.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X2

    UniProtKB/TrEMBL
    A0A2J8TJZ8
    Conserved Domains (1) summary
    cd07415
    Location:6 → 256
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

  2. XM_024233067.2 → XP_024088835.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X2

    UniProtKB/TrEMBL
    A0A2J8TJZ8
    Conserved Domains (1) summary
    cd07415
    Location:6 → 256
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

  3. XM_024233065.2 → XP_024088833.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X1

    UniProtKB/Swiss-Prot
    Q5R6K8
    UniProtKB/TrEMBL
    A0A2J8TJZ8, A0A2J8TK62
    Conserved Domains (1) summary
    cd07415
    Location:6 → 290
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

  4. XM_063717090.1 → XP_063573160.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X3

  5. XM_024233068.2 → XP_024088836.1  serine/threonine-protein phosphatase 4 catalytic subunit isoform X3

    UniProtKB/TrEMBL
    A0A2J8TJZ8
    Conserved Domains (1) summary
    cd07415
    Location:1 → 211
    MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R6K8.1 GenPept UniProtKB/Swiss-Prot:Q5R6K8

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