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RALY RALY heterogeneous nuclear ribonucleoprotein [ Sus scrofa (pig) ]

Gene ID: 100157085, updated on 8-Mar-2024

Summary

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Official Symbol
RALYprovided by VGNC
Official Full Name
RALY heterogeneous nuclear ribonucleoproteinprovided by VGNC
Primary source
VGNC:VGNC:95709
See related
Ensembl:ENSSSCG00000007275
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 111.0), spleen (RPKM 43.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (37447827..37542461)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (42870964..42965792, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 4B Neighboring gene uncharacterized LOC110257469 Neighboring gene eukaryotic translation initiation factor 2 subunit beta Neighboring gene agouti signaling protein Neighboring gene adenosylhomocysteinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein Raly
Names
RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    37447827..37542461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001929104.6 → XP_001929139.2  RNA-binding protein Raly isoform X4

    See identical proteins and their annotated locations for XP_001929139.2

    UniProtKB/TrEMBL
    A0A286ZYT0, A0A287AKP9, A0A287BLC1, A0A4X1T4P6
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  2. XM_003134403.5 → XP_003134451.1  RNA-binding protein Raly isoform X7

    See identical proteins and their annotated locations for XP_003134451.1

    UniProtKB/TrEMBL
    A0A286ZYT0, A0A4X1T3Z3
    Related
    ENSSSCP00000045685.3, ENSSSCT00000050590.3
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  3. XM_003359947.4 → XP_003359995.1  RNA-binding protein Raly isoform X4

    See identical proteins and their annotated locations for XP_003359995.1

    UniProtKB/TrEMBL
    A0A286ZYT0, A0A287AKP9, A0A287BLC1, A0A4X1T4P6
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  4. XM_021077806.1 → XP_020933465.1  RNA-binding protein Raly isoform X4

    UniProtKB/TrEMBL
    A0A286ZYT0, A0A287AKP9, A0A287BLC1, A0A4X1T4P6
    Related
    ENSSSCP00000044472.3, ENSSSCT00000046368.3
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  5. XM_005672868.3 → XP_005672925.1  RNA-binding protein Raly isoform X7

    See identical proteins and their annotated locations for XP_005672925.1

    UniProtKB/TrEMBL
    A0A286ZYT0, A0A4X1T3Z3
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  6. XM_013985298.2 → XP_013840752.1  RNA-binding protein Raly isoform X3

    UniProtKB/TrEMBL
    A0A286ZLQ8, A0A8D0SFP1, A0A8D1MJJ9
    Conserved Domains (2) summary
    COG0724
    Location:12 → 106
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  7. XM_013985301.2 → XP_013840755.1  RNA-binding protein Raly isoform X6

    UniProtKB/TrEMBL
    A0A286ZYT0
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  8. XM_005672865.3 → XP_005672922.1  RNA-binding protein Raly isoform X3

    UniProtKB/TrEMBL
    A0A286ZLQ8, A0A8D0SFP1, A0A8D1MJJ9
    Conserved Domains (2) summary
    COG0724
    Location:12 → 106
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  9. XM_021077809.1 → XP_020933468.1  RNA-binding protein Raly isoform X6

    UniProtKB/TrEMBL
    A0A286ZYT0
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  10. XM_021077814.1 → XP_020933473.1  RNA-binding protein Raly isoform X9

    UniProtKB/TrEMBL
    A0A8D1MJT6, A0A8D1RYJ0, F1S4Y9
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  11. XM_021077811.1 → XP_020933470.1  RNA-binding protein Raly isoform X7

    UniProtKB/TrEMBL
    A0A286ZYT0, A0A4X1T3Z3
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  12. XM_021077800.1 → XP_020933459.1  RNA-binding protein Raly isoform X1

    UniProtKB/TrEMBL
    A0A8D0LEQ5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  13. XM_021077804.1 → XP_020933463.1  RNA-binding protein Raly isoform X2

    UniProtKB/TrEMBL
    A0A8D0LEQ5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  14. XM_021077813.1 → XP_020933472.1  RNA-binding protein Raly isoform X8

    UniProtKB/TrEMBL
    A0A4X1T202, A0A8D1MJT6, F1S4Y9
    Related
    ENSSSCP00000007747.4, ENSSSCT00000007960.5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  15. XM_021077808.1 → XP_020933467.1  RNA-binding protein Raly isoform X5

    UniProtKB/TrEMBL
    A0A8D0HUD4
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  16. XM_021077799.1 → XP_020933458.1  RNA-binding protein Raly isoform X1

    UniProtKB/TrEMBL
    A0A8D0LEQ5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  17. XM_021077803.1 → XP_020933462.1  RNA-binding protein Raly isoform X2

    UniProtKB/TrEMBL
    A0A8D0LEQ5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  18. XM_021077807.1 → XP_020933466.1  RNA-binding protein Raly isoform X5

    UniProtKB/TrEMBL
    A0A8D0HUD4
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  19. XM_021077801.1 → XP_020933460.1  RNA-binding protein Raly isoform X1

    UniProtKB/TrEMBL
    A0A8D0LEQ5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  20. XM_021077802.1 → XP_020933461.1  RNA-binding protein Raly isoform X1

    UniProtKB/TrEMBL
    A0A8D0LEQ5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  21. XM_021077805.1 → XP_020933464.1  RNA-binding protein Raly isoform X2

    UniProtKB/TrEMBL
    A0A8D0LEQ5
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

  22. XM_021077812.1 → XP_020933471.1  RNA-binding protein Raly isoform X7

    UniProtKB/TrEMBL
    A0A286ZYT0, A0A4X1T3Z3
    Conserved Domains (1) summary
    cd12604
    Location:20 → 95
    RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly
Nucleotide Protein
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