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RERG RAS like estrogen regulated growth inhibitor [ Sus scrofa (pig) ]

Gene ID: 100155884, updated on 8-Mar-2024

Summary

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Official Symbol
RERGprovided by VGNC
Official Full Name
RAS like estrogen regulated growth inhibitorprovided by VGNC
Primary source
VGNC:VGNC:92217
See related
Ensembl:ENSSSCG00000000602
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 24.4), lung (RPKM 17.7) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (57349386..57462813)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (60736648..60851694)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene EGFR pathway substrate 8, signaling adaptor Neighboring gene protein tyrosine phosphatase receptor type O Neighboring gene uncharacterized LOC106510355 Neighboring gene phosphodiesterase 6H Neighboring gene Rho GDP dissociation inhibitor beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related and estrogen-regulated growth inhibitor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    57349386..57462813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003481681.4 → XP_003481729.1  ras-related and estrogen-regulated growth inhibitor isoform X1

    UniProtKB/TrEMBL
    A0A286ZMF5, A0A4X1V4J1, A0A4X1V844, F1SQX0
    Related
    ENSSSCP00000000632.4, ENSSSCT00000000647.5
    Conserved Domains (2) summary
    smart00010
    Location:6 → 170
    small_GTPase; Small GTPase of the Ras superfamily; ill-defined subfamily
    cd04146
    Location:8 → 169
    RERG_RasL11_like; Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

  2. XM_021092305.1 → XP_020947964.1  ras-related and estrogen-regulated growth inhibitor isoform X2

    UniProtKB/TrEMBL
    A0A286ZMF5, A0A4X1V844, A0A8D1FD65
    Conserved Domains (1) summary
    cd04146
    Location:2 → 150
    RERG_RasL11_like; Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

  3. XM_021092306.1 → XP_020947965.1  ras-related and estrogen-regulated growth inhibitor isoform X3

    UniProtKB/TrEMBL
    A0A286ZMF5, A0A4X1V844, A0A8D1FD65
    Conserved Domains (1) summary
    cl21455
    Location:4 → 135
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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