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IGBP1 immunoglobulin binding protein 1 [ Sus scrofa (pig) ]

Gene ID: 100154214, updated on 8-Mar-2024

Summary

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Gene symbol
IGBP1
Gene description
immunoglobulin binding protein 1
See related
Ensembl:ENSSSCG00000012382
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 44.5), lung (RPKM 29.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (56173773..56206121)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (63371489..63403353)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene ectodysplasin A Neighboring gene acyl-CoA wax alcohol acyltransferase 2 Neighboring gene OTU deubiquitinase 6A Neighboring gene diacylglycerol O-acyltransferase 2 like 6 Neighboring gene acyl-CoA wax alcohol acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase 2A binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin-binding protein 1
Names
immunoglobulin (CD79A) binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    56173773..56206121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927370.5 → XP_001927405.1  immunoglobulin-binding protein 1

    UniProtKB/TrEMBL
    A0A4X1VXZ5, A0A8D0JFJ0, K7GQ35
    Related
    ENSSSCP00000030001.1, ENSSSCT00000032638.4
    Conserved Domains (1) summary
    pfam04177
    Location:17 → 328
    TAP42; TAP42-like family
Nucleotide Protein
Heading Accession and Version

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