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ANKRD22 ankyrin repeat domain 22 [ Sus scrofa (pig) ]

Gene ID: 100152630, updated on 8-Mar-2024

Summary

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Official Symbol
ANKRD22provided by VGNC
Official Full Name
ankyrin repeat domain 22provided by VGNC
Primary source
VGNC:VGNC:85329
See related
Ensembl:ENSSSCG00000010445
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in lung (RPKM 15.5), spleen (RPKM 10.8) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (100747955..100772412, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (109732656..109757085, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256748 Neighboring gene lipase member K Neighboring gene lipase member N Neighboring gene lipase family member M Neighboring gene STAM binding protein like 1 Neighboring gene actin alpha 2, smooth muscle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    100747955..100772412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928460.6 → XP_001928495.1  ankyrin repeat domain-containing protein 22

    UniProtKB/TrEMBL
    A0A4X1V4U4, F1SCY9
    Related
    ENSSSCP00000011133.3, ENSSSCT00000011430.4
    Conserved Domains (4) summary
    cd00204
    Location:39 → 187
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:44 → 165
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:5 → 60
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:39 → 70
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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