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POSTN periostin [ Sus scrofa (pig) ]

Gene ID: 100152401, updated on 8-Mar-2024

Summary

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Official Symbol
POSTNprovided by VGNC
Official Full Name
periostinprovided by VGNC
Primary source
VGNC:VGNC:91670
See related
Ensembl:ENSSSCG00000009361
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in subcutaneous adipose (RPKM 824.8), lung (RPKM 54.1) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (13225183..13258973, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (13200044..13233804, complement)

Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106505265 Neighboring gene SPT20 homolog, SAGA complex component Neighboring gene exosome component 8 Neighboring gene uncharacterized LOC102166397 Neighboring gene uncharacterized LOC110255747 Neighboring gene transient receptor potential cation channel subfamily C member 4 Neighboring gene ubiquitin fold modifier 1 Neighboring gene uncharacterized LOC110255748

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
periostin
Names
periostin, osteoblast specific factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206347.1 → NP_001193276.1  periostin isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and it encodes the longer protein (isoform 1).
    Source sequence(s)
    AEMK02000075, EW108748, EW135582, EW136336, EW140251, EW142324, EW167232, EW350999, EW406413
    UniProtKB/TrEMBL
    A0A4X1SVF9, A0A8D1IGT6, A0A8D1RN34, F1RS37
    Related
    ENSSSCP00000009991.2, ENSSSCT00000010258.4
    Conserved Domains (1) summary
    pfam02469
    Location:245 → 367
    Fasciclin; Fasciclin domain

  2. NM_001206351.1 → NP_001193280.1  periostin isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate in-frame coding regions, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1.
    Source sequence(s)
    AEMK02000075, EW108748, EW108816, EW350999, EW373446, EW406413, GU373679
    UniProtKB/TrEMBL
    A0A4X1STN4, A0A8D0WEG1, A0A8D1RSS7, D3K5K1, I3LDM1
    Related
    ENSSSCP00000022153.1, ENSSSCT00000022465.4
    Conserved Domains (1) summary
    pfam02469
    Location:245 → 367
    Fasciclin; Fasciclin domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

    Range
    13225183..13258973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005668350.3 → XP_005668407.1  periostin isoform X1

    UniProtKB/TrEMBL
    A0A8D1RN34
    Conserved Domains (1) summary
    pfam02469
    Location:245 → 367
    Fasciclin; Fasciclin domain

  2. XM_005668351.3 → XP_005668408.1  periostin isoform X2

    UniProtKB/TrEMBL
    A0A8D1RN34
    Conserved Domains (1) summary
    pfam02469
    Location:245 → 367
    Fasciclin; Fasciclin domain
Nucleotide Protein
Heading Accession and Version

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