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HPCA hippocalcin [ Sus scrofa (pig) ]

Gene ID: 100144505, updated on 8-Mar-2024

Summary

Official Symbol
HPCAprovided by VGNC
Official Full Name
hippocalcinprovided by VGNC
Primary source
VGNC:VGNC:88957
See related
Ensembl:ENSSSCG00000032664
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Restricted expression toward mixtures (RPKM 11.2) See more
Orthologs
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Genomic context

Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (89187544..89197049)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (83214827..83224104)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene S100P binding protein Neighboring gene fibronectin type III domain containing 5 Neighboring gene transmembrane protein 54 Neighboring gene ring finger protein 19B Neighboring gene adenylate kinase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
neuron-specific calcium-binding protein hippocalcin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123125.1NP_001116597.1  neuron-specific calcium-binding protein hippocalcin

    See identical proteins and their annotated locations for NP_001116597.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ917644
    UniProtKB/Swiss-Prot
    Q06AT1
    UniProtKB/TrEMBL
    A0A8D1AJX8
    Conserved Domains (1) summary
    COG5126
    Location:13179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    89187544..89197049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005665171.3XP_005665228.2  neuron-specific calcium-binding protein hippocalcin isoform X1

    UniProtKB/TrEMBL
    A0A8D1P4Z0
    Conserved Domains (1) summary
    COG5126
    Location:91257
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
  2. XM_005665170.3XP_005665227.1  neuron-specific calcium-binding protein hippocalcin isoform X2

    See identical proteins and their annotated locations for XP_005665227.1

    UniProtKB/Swiss-Prot
    Q06AT1
    UniProtKB/TrEMBL
    A0A8D1AJX8
    Related
    ENSSSCP00000040656.3, ENSSSCT00000039173.3
    Conserved Domains (1) summary
    COG5126
    Location:13179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]