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cast calpastatin [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100136283, updated on 8-Mar-2024

Summary

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Gene symbol
cast
Gene description
calpastatin
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 7 NC_048571.1 (73117294..73160432)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 7 NC_035083.1 (64387959..64397820)

Chromosome 7 - NC_048571.1Genomic Context describing neighboring genes Neighboring gene elongation factor for RNA polymerase II 2 Neighboring gene proprotein convertase subtilisin/kexin type 1 Neighboring gene uncharacterized LOC110528460 Neighboring gene uncharacterized LOC118965392

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of calpastatin gene in fish: its potential role in muscle growth and fillet quality. Salem M, et al. Comp Biochem Physiol B Biochem Mol Biol, 2005 Aug. PMID 15990347
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inhibition of cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpastatin
Names
calpastatin long

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124538.1 → NP_001118010.1  calpastatin

    See identical proteins and their annotated locations for NP_001118010.1

    Status: PROVISIONAL

    Source sequence(s)
    AY937407
    UniProtKB/TrEMBL
    A0A060WVB5, Q49BZ3
    Conserved Domains (1) summary
    pfam00748
    Location:250 → 371
    Calpain_inhib; Calpain inhibitor

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    73117294..73160432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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