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RAE1 ribonucleic acid export 1 [ Sus scrofa (pig) ]

Gene ID: 100125839, updated on 8-Mar-2024

Summary

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Official Symbol
RAE1provided by VGNC
Official Full Name
ribonucleic acid export 1provided by VGNC
Primary source
VGNC:VGNC:96528
See related
Ensembl:ENSSSCG00000007503
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
MRNP41
Expression
Ubiquitous expression in ovary (RPKM 33.6), spleen (RPKM 11.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (57751858..57768594)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (64916069..64932171)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 7 Neighboring gene SPO11 initiator of meiotic double strand breaks Neighboring gene RNA binding motif protein 38 Neighboring gene CCCTC-binding factor like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA export factor
Names
RAE1 RNA export 1 homolog
mRNA-associated protein mrnp 41
rae1 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105296.1 → NP_001098766.1  mRNA export factor

    See identical proteins and their annotated locations for NP_001098766.1

    Status: PROVISIONAL

    Source sequence(s)
    CR956362
    UniProtKB/Swiss-Prot
    A5GFN6
    UniProtKB/TrEMBL
    A0A480UJG9, A0A8D1Q3H1
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    57751858..57768594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005673037.3 → XP_005673094.1  mRNA export factor isoform X1

    See identical proteins and their annotated locations for XP_005673094.1

    UniProtKB/Swiss-Prot
    A5GFN6
    UniProtKB/TrEMBL
    A0A480UJG9, A0A8D1Q3H1
    Related
    ENSSSCP00000030930.1, ENSSSCT00000036296.4
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A5GFN6.1 GenPept UniProtKB/Swiss-Prot:A5GFN6

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