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ZBTB9 zinc finger and BTB domain containing 9 [ Equus caballus (horse) ]

Gene ID: 100061718, updated on 8-Mar-2024

Summary

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Official Symbol
ZBTB9provided by VGNC
Official Full Name
zinc finger and BTB domain containing 9provided by VGNC
Primary source
VGNC:VGNC:25158
See related
Ensembl:ENSECAG00000001767
Gene type
protein coding
RefSeq status
INFERRED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (34755980..34758795)
102 previous assembly EquCab2.0 (GCF_000002305.2) 20 NC_009163.2 (33847861..33850677)

Chromosome 20 - NC_009163.3Genomic Context describing neighboring genes Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene uncharacterized LOC111769307 Neighboring gene BCL2 antagonist/killer 1 Neighboring gene gametogenetin binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257127.1 → NP_001244056.1  zinc finger and BTB domain-containing protein 9

    See identical proteins and their annotated locations for NP_001244056.1

    Status: INFERRED

    Source sequence(s)
    PJAA01000021
    UniProtKB/TrEMBL
    F6VL45
    Conserved Domains (4) summary
    smart00225
    Location:49 → 142
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:376 → 393
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:401 → 421
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:38 → 138
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009163.3 Reference EquCab3.0 Primary Assembly

    Range
    34755980..34758795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005603517.3 → XP_005603574.1  zinc finger and BTB domain-containing protein 9 isoform X1

    See identical proteins and their annotated locations for XP_005603574.1

    UniProtKB/TrEMBL
    F6VL45
    Related
    ENSECAP00000061729.1, ENSECAT00000128456.1
    Conserved Domains (4) summary
    smart00225
    Location:49 → 142
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:376 → 393
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:401 → 421
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:38 → 138
    BTB; BTB/POZ domain
Nucleotide Protein
Heading Accession and Version

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