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GJC1 gap junction protein gamma 1 [ Sus scrofa (pig) ]

Gene ID: 100048959, updated on 8-Mar-2024

Summary

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Official Symbol
GJC1provided by VGNC
Official Full Name
gap junction protein gamma 1provided by VGNC
Primary source
VGNC:VGNC:88468
See related
Ensembl:ENSSSCG00000021306
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
GJA7; cx45
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 3.3), lung (RPKM 2.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GJC1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (18526060..18560221)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (18770695..18795440)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene elongation factor Tu GTP binding domain containing 2 Neighboring gene HIG1 hypoxia inducible domain family member 1B Neighboring gene ADAM metallopeptidase domain 11 Neighboring gene DBF4 zinc finger B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of connexin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gap junction gamma-1 protein
Names
connexin 45
gap junction alpha-7 protein
gap junction protein, alpha 7, 45kDa
gap junction protein, delta 3, 31.9kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097519.1 → NP_001090988.1  gap junction gamma-1 protein

    See identical proteins and their annotated locations for NP_001090988.1

    Status: PROVISIONAL

    Source sequence(s)
    EF437944
    UniProtKB/Swiss-Prot
    A4GVD1
    UniProtKB/TrEMBL
    A0A8D1TIH1
    Conserved Domains (3) summary
    smart00037
    Location:42 → 75
    CNX; Connexin homologues
    smart01089
    Location:187 → 253
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:2 → 255
    Connexin; Connexin

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    18526060..18560221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005668706.2 → XP_005668763.1  gap junction gamma-1 protein isoform X1

    See identical proteins and their annotated locations for XP_005668763.1

    UniProtKB/Swiss-Prot
    A4GVD1
    UniProtKB/TrEMBL
    A0A8D1TIH1
    Conserved Domains (3) summary
    smart00037
    Location:42 → 75
    CNX; Connexin homologues
    smart01089
    Location:187 → 253
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:2 → 255
    Connexin; Connexin

  2. XM_005668705.3 → XP_005668762.1  gap junction gamma-1 protein isoform X1

    See identical proteins and their annotated locations for XP_005668762.1

    UniProtKB/Swiss-Prot
    A4GVD1
    UniProtKB/TrEMBL
    A0A8D1TIH1
    Related
    ENSSSCP00000021968.1, ENSSSCT00000030363.3
    Conserved Domains (3) summary
    smart00037
    Location:42 → 75
    CNX; Connexin homologues
    smart01089
    Location:187 → 253
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:2 → 255
    Connexin; Connexin

  3. XM_005668704.3 → XP_005668761.1  gap junction gamma-1 protein isoform X1

    See identical proteins and their annotated locations for XP_005668761.1

    UniProtKB/Swiss-Prot
    A4GVD1
    UniProtKB/TrEMBL
    A0A8D1TIH1
    Related
    ENSSSCP00000040946.1, ENSSSCT00000051568.2
    Conserved Domains (3) summary
    smart00037
    Location:42 → 75
    CNX; Connexin homologues
    smart01089
    Location:187 → 253
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:2 → 255
    Connexin; Connexin

  4. XM_013980868.2 → XP_013836322.1  gap junction gamma-1 protein isoform X1

    UniProtKB/Swiss-Prot
    A4GVD1
    UniProtKB/TrEMBL
    A0A8D1TIH1
    Conserved Domains (3) summary
    smart00037
    Location:42 → 75
    CNX; Connexin homologues
    smart01089
    Location:187 → 253
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:2 → 255
    Connexin; Connexin

  5. XM_005668708.3 → XP_005668765.1  gap junction gamma-1 protein isoform X1

    See identical proteins and their annotated locations for XP_005668765.1

    UniProtKB/Swiss-Prot
    A4GVD1
    UniProtKB/TrEMBL
    A0A8D1TIH1
    Related
    ENSSSCP00000070627.1, ENSSSCT00000090660.2
    Conserved Domains (3) summary
    smart00037
    Location:42 → 75
    CNX; Connexin homologues
    smart01089
    Location:187 → 253
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:2 → 255
    Connexin; Connexin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4GVD1.1 GenPept UniProtKB/Swiss-Prot:A4GVD1

Gene LinkOut

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