TRPC5 transient receptor potential cation channel subfamily C member 5 [Oryctolagus cuniculus (rabbit)] - Gene

Summary

Gene symbol: TRPC5
Gene description: transient receptor potential cation channel subfamily C member 5
See related: Ensembl:ENSOCUG00000009245
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Oryctolagus cuniculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Also known as: TRP5
Orthologs: human mouse all
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Genomic context

Location:: chromosome: X

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2023_02	current	UM_NZW_1.0 (GCF_009806435.1)	X	NC_067395.1 (60227194..60550449, complement)

Chromosome X - NC_067395.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_067395.1 Chromosome X Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Trpc5 (e-PCR), detects polymorphism
- UniSTS:516716

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables inositol 1,4,5 trisphosphate binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables store-operated calcium channel activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in calcium ion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in manganese ion transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of cytosolic calcium ion concentration	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of cation channel complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: short transient receptor potential channel 5

Names: CCE2; capacitative calcium entry channel 2; rtrp5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001082779.1 → NP_001076248.1 short transient receptor potential channel 5

See identical proteins and their annotated locations for NP_001076248.1

Status: PROVISIONAL

Source sequence(s)

AJ006203

UniProtKB/Swiss-Prot

O62852

Related

ENSOCUP00000007983.2, ENSOCUT00000009246.2

Conserved Domains (4) summary

cd00204
Location:39 → 162

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

TIGR00870
Location:17 → 756

trp; transient-receptor-potential calcium channel protein

pfam08344
Location:176 → 235

TRP_2; Transient receptor ion channel II

sd00045
Location:35 → 67

ANK; ANK repeat [structural motif]