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CD5 CD5 molecule [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100008958, updated on 8-Mar-2024

Summary

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Gene symbol
CD5
Gene description
CD5 molecule
See related
Ensembl:ENSOCUG00000022346
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See CD5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259168.1 (4328737..4351486, complement)

NW_026259168.1Genomic Context describing neighboring genes Neighboring gene pepsinogen 5, group I (pepsinogen A) Neighboring gene VPS37C subunit of ESCRT-I Neighboring gene uncharacterized LOC127487479

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026259168 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of rabbit CD5 isoforms. Pospisil R, et al. Mol Immunol, 2009 Aug. PMID 19520434, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in T cell costimulation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-cell surface glycoprotein CD5
Names
lymphocyte receptor CD5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082177.1 → NP_001075646.1  T-cell surface glycoprotein CD5 precursor

    See identical proteins and their annotated locations for NP_001075646.1

    Status: PROVISIONAL

    Source sequence(s)
    AY682087
    UniProtKB/TrEMBL
    G1U1N0, Q6B4R8
    Related
    ENSOCUP00000023266.1, ENSOCUT00000030192.3
    Conserved Domains (3) summary
    smart00202
    Location:36 → 130
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:41 → 129
    SRCR; Scavenger receptor cysteine-rich domain
    cl02509
    Location:268 → 359
    SRCR_2; Scavenger receptor cysteine-rich domain

RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NW_026259168.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    4328737..4351486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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