U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

depdc1b DEP domain containing 1B [ Danio rerio (zebrafish) ]

Gene ID: 100006170, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
depdc1bprovided by ZNC
Official Full Name
DEP domain containing 1Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080708-2
See related
Ensembl:ENSDARG00000099541 AllianceGenome:ZFIN:ZDB-GENE-080708-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within intracellular signal transduction. Is expressed in blastoderm; blastodisc; head; and trunk. Orthologous to human DEPDC1B (DEP domain containing 1B). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003335884.2 (21514..28101, complement)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003335884.2 (21620..28101, complement)

NW_003335884.2Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. DEPDC1B coordinates de-adhesion events and cell-cycle progression at mitosis. Marchesi S, et al. Dev Cell, 2014 Nov 24. PMID 25458010, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
involved_in system development IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
DEP domain-containing protein 1B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NW_003335884.2 Reference GRCz11 Primary Assembly

    Range
    21514..28101 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003200791.5 → XP_003200839.4  DEP domain-containing protein 1B

    UniProtKB/TrEMBL
    A0A8M1RMV8
    Related
    ENSDARP00000132772.1, ENSDART00000166271.2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.