golim4a golgi integral membrane protein 4a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: golim4aprovided by ZNC
Official Full Name: golgi integral membrane protein 4aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041026-2
See related: Ensembl:ENSDARG00000113393 AllianceGenome:ZFIN:ZDB-GENE-041026-2
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: golph4; wu:fc54e03
Summary: Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Predicted to be integral component of membrane. Orthologous to human GOLIM4 (golgi integral membrane protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (5195246..5209247, complement)
106	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_003336951.2 (2787..22694, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (5088699..5107875, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003336686.1 (295..1492)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003336951.2 (2787..22694, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc54e03 (e-PCR)
- UniSTS:189339

fc49a05.y1 (e-PCR)
- UniSTS:194006

Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Golgi integral membrane protein 4a

Names: golgi phosphoprotein 4; golim4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001098192.1 → NP_001091662.1 Golgi integral membrane protein 4a

See identical proteins and their annotated locations for NP_001091662.1

Status: PROVISIONAL

Source sequence(s)

BC139887

UniProtKB/TrEMBL

A5D6U4

Related

ENSDARP00000155174.1, ENSDART00000183109.1

Conserved Domains (2) summary

TIGR00927
Location:337 → 523

2A1904; K+-dependent Na+/Ca+ exchanger

TIGR02168
Location:35 → 365

SMC_prok_B; chromosome segregation protein SMC, common bacterial type