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    AT1G80970 XH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844437, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G80970
    Gene description
    XH domain-containing protein
    Primary source
    Araport:AT1G80970
    Locus tag
    AT1G80970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23A5.33; F23A5_33
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (30420102..30421995)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Snf1 kinase interactor-like protein Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene F-box and Leucine Rich Repeat domains containing protein Neighboring gene ncRNA Neighboring gene stress response NST1-like protein Neighboring gene XH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001335027.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    XH domain-containing protein
    NP_001185453.1
    • XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH domain-containing protein (TAIR:AT1G80990.1).
    NP_001319435.1
    • XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH domain-containing protein (TAIR:AT1G80990.1); Has 32 Blast hits to 32 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30420102..30421995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198524.2 → NP_001185453.1  XH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185453.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HVT8, Q9SAG3
      Conserved Domains (1) summary
      pfam03469
      Location:82 → 207
      XH; XH domain

    2. NM_106745.4 → NP_178212.2  XH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178212.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E6M6, Q1LYU7, Q9SAG3
      Conserved Domains (1) summary
      pfam03469
      Location:82 → 208
      XH; XH domain

    3. NM_001335028.1 → NP_001321423.1  XH domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E6M6, Q1LYU7, Q9SAG3
      Conserved Domains (1) summary
      pfam03469
      Location:82 → 208
      XH; XH domain

    4. NM_001335027.1 → NP_001319435.1  XH domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E6M6, Q1LYU7, Q9SAG3
      Conserved Domains (1) summary
      pfam03469
      Location:82 → 208
      XH; XH domain
    Nucleotide Protein
    Heading Accession and Version

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