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    AT5G49920 Octicosapeptide/Phox/Bem1p family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835055, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G49920
    Gene description
    Octicosapeptide/Phox/Bem1p family protein
    Primary source
    Araport:AT5G49920
    Locus tag
    AT5G49920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K9P8.6; K9P8_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (20306409..20307943, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene mitotic checkpoint family protein Neighboring gene chloride channel C Neighboring gene Beta-glucosidase, GBA2 type family protein Neighboring gene chloroplast heat shock protein 70-2 Neighboring gene ncRNA Neighboring gene zinc knuckle (CCHC-type) family protein Neighboring gene NIFU-like protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_124370.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Octicosapeptide/Phox/Bem1p family protein
    NP_199803.1
    • Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT3G46920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20306409..20307943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124370.4 → NP_199803.1  Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199803.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UE48, A0A5S9YCJ6, Q84W93, Q9LTX8
      Conserved Domains (1) summary
      cd06410
      Location:13 → 105
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
    Nucleotide Protein
    Heading Accession and Version

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