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    AT4G22720 Actin-like ATPase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828368, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT4G22720
    Gene description
    Actin-like ATPase superfamily protein
    Primary source
    Araport:AT4G22720
    Locus tag
    AT4G22720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12H17.110; T12H17_110
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (11936942..11938969)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 32 Neighboring gene cytochrome P450, family 706, subfamily A, polypeptide 2 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_118398.5
    NM_202864.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N(6)-L-threonylcarbamoyladenine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of EKC/KEOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Actin-like ATPase superfamily protein
    NP_194003.1
    • Actin-like ATPase superfamily protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, glycoprotease (InterPro:IPR000905), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861); BEST Arabidopsis thaliana protein match is: glycoprotease 1 (TAIR:AT2G45270.1); Has 9582 Blast hits to 9549 proteins in 2910 species: Archae - 279; Bacteria - 5450; Metazoa - 250; Fungi - 284; Plants - 210; Viruses - 0; Other Eukaryotes - 3109 (source: NCBI BLink).
    NP_974593.1
    • Actin-like ATPase superfamily protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, glycoprotease (InterPro:IPR000905), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861); BEST Arabidopsis thaliana protein match is: glycoprotease 1 (TAIR:AT2G45270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11936942..11938969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118398.5 → NP_194003.1  Actin-like ATPase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194003.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4Q2, A0A5S9XX31, A0A7G2F056, O49653
      Conserved Domains (1) summary
      PTZ00340
      Location:5 → 339
      PTZ00340; O-sialoglycoprotein endopeptidase-like protein; Provisional

    2. NM_202864.1 → NP_974593.1  Actin-like ATPase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974593.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4Q2, A0A5S9XX31, A0A7G2F056, O49653
      Conserved Domains (1) summary
      PTZ00340
      Location:5 → 339
      PTZ00340; O-sialoglycoprotein endopeptidase-like protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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