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    AT4G18330 Translation elongation factor EF1A/initiation factor IF2gamma family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827559, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT4G18330
    Gene description
    Translation elongation factor EF1A/initiation factor IF2gamma family protein
    Primary source
    Araport:AT4G18330
    Locus tag
    AT4G18330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9A21.180; T9A21_180
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (10126533..10128734)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Glycosyl hydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001341274.1
    NM_202838.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Translation elongation factor EF1A/initiation factor IF2gamma family protein
    NP_001319983.1
    • Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 gamma subunit (TAIR:AT1G04170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974567.1
    • Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 gamma subunit (TAIR:AT1G04170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10126533..10128734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341274.1 → NP_001319983.1  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JQU2

    2. NM_202838.1 → NP_974567.1  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974567.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2V9, F4JQU1
      Conserved Domains (4) summary
      cd01888
      Location:40 → 247
      eIF2_gamma; Gamma subunit of initiation factor 2 (eIF2 gamma)
      PTZ00327
      Location:6 → 464
      PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional
      cd03688
      Location:248 → 361
      eIF2_gamma_II; Domain II of the gamma subunit of eukaryotic translation initiation factor 2
      cd15490
      Location:364 → 458
      eIF2_gamma_III; Domain III of eukaryotic initiation factor eIF2 gamma
    Nucleotide Protein
    Heading Accession and Version

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