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    Zcchc9 zinc finger, CCHC domain containing 9 [ Mus musculus (house mouse) ]

    Gene ID: 69085, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Zcchc9provided by MGI
    Official Full Name
    zinc finger, CCHC domain containing 9provided by MGI
    Primary source
    MGI:MGI:1916335
    See related
    Ensembl:ENSMUSG00000021621 AllianceGenome:MGI:1916335
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810019C21Rik
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleolus and nucleoplasm. Orthologous to human ZCCHC9 (zinc finger CCHC-type containing 9). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 7.5), limb E14.5 (RPKM 6.8) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Zcchc9 in Genome Data Viewer
    Location:
    13 C3; 13 47.43 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (91944652..91955824, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (91796519..91807718, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4833422C13 gene Neighboring gene predicted gene, 22778 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene STARR-seq mESC enhancer starr_35256 Neighboring gene STARR-positive B cell enhancer ABC_E5409 Neighboring gene STARR-positive B cell enhancer ABC_E4085 Neighboring gene STARR-seq mESC enhancer starr_35257 Neighboring gene STARR-seq mESC enhancer starr_35258 Neighboring gene creatine kinase, mitochondrial 2 Neighboring gene RAS protein-specific guanine nucleotide-releasing factor 2 Neighboring gene predicted gene, 46435

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCHC domain-containing protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145453.2 → NP_663428.2  zinc finger CCHC domain-containing protein 9

      Status: VALIDATED

      Source sequence(s)
      BB291225, BB656071, BC024496
      Consensus CDS
      CCDS36742.1
      UniProtKB/Swiss-Prot
      E9QQ14, Q8R1J3, Q921T6
      Related
      ENSMUSP00000022121.7, ENSMUST00000022121.13
      Conserved Domains (1) summary
      PTZ00368
      Location:130 → 229
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      91944652..91955824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517361.5 → XP_006517424.1  zinc finger CCHC domain-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      Q8BRH8
      Conserved Domains (1) summary
      PTZ00368
      Location:130 → 211
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    2. XM_017315591.3 → XP_017171080.1  zinc finger CCHC domain-containing protein 9 isoform X2

      Conserved Domains (1) summary
      PTZ00368
      Location:4 → 103
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    RNA

    1. XR_003950474.2 RNA Sequence

    2. XR_004938065.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R1J3.2 GenPept UniProtKB/Swiss-Prot:Q8R1J3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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