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    htra3b HtrA serine peptidase 3b [ Danio rerio (zebrafish) ]

    Gene ID: 573378, updated on 27-Mar-2024

    Summary

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    Official Symbol
    htra3bprovided by ZNC
    Official Full Name
    HtrA serine peptidase 3bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110602-1
    See related
    Ensembl:ENSDARG00000010925 AllianceGenome:ZFIN:ZDB-GENE-110602-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human HTRA3 (HtrA serine peptidase 3). [provided by Alliance of Genome Resources, Apr 2022]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (61816792..61842980, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (61506628..61532829, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884088 Neighboring gene acyl-CoA oxidase 3, pristanoyl Neighboring gene SH3 domain and tetratricopeptide repeats 1 Neighboring gene gametocyte-specific factor 1-like Neighboring gene tudor domain containing 7 b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine protease HTRA3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      61816792..61842980 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478136.1 → XP_021333811.1  serine protease HTRA3

      UniProtKB/TrEMBL
      A0A8M9QDF7
      Related
      ENSDARP00000016871.9, ENSDART00000023770.9
      Conserved Domains (3) summary
      smart00280
      Location:87 → 133
      KAZAL; Kazal type serine protease inhibitors
      pfam00219
      Location:24 → 75
      IGFBP; Insulin-like growth factor binding protein
      cl28339
      Location:152 → 438
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials