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    Poteg POTE ankyrin domain family, member G [ Mus musculus (house mouse) ]

    Gene ID: 70952, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Potegprovided by MGI
    Official Full Name
    POTE ankyrin domain family, member Gprovided by MGI
    Primary source
    MGI:MGI:1918202
    See related
    Ensembl:ENSMUSG00000063932 Ensembl:ENSMUSG00000110333 AllianceGenome:MGI:1918202
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1698; Gsarp1; Gsarp2; 4921537P18Rik; 4930456F22Rik
    Summary
    Orthologous to several human genes including POTEB (POTE ankyrin domain family member B); POTEB2 (POTE ankyrin domain family member B2); and POTEC (POTE ankyrin domain family member C). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 12.4) See more
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    Genomic context

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    Location:
    8 A2; 8 16.04 cM
    Exon count:
    69
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (27937662..28110476)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (27447634..27582717)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cholinergic receptor, nicotinic, alpha polypeptide 6 Neighboring gene predicted gene, 24410 Neighboring gene STARR-seq mESC enhancer starr_21038 Neighboring gene STARR-seq mESC enhancer starr_21039 Neighboring gene STARR-seq mESC enhancer starr_21040 Neighboring gene STARR-seq mESC enhancer starr_21041 Neighboring gene STARR-seq mESC enhancer starr_21042 Neighboring gene STARR-seq mESC enhancer starr_21044 Neighboring gene predicted gene, 24202 Neighboring gene STARR-seq mESC enhancer starr_21046 Neighboring gene predicted gene, 39153

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Two novel transcripts encoding two Ankyrin repeat containing proteins have preponderant expression during the mouse spermatogenesis. Wang F, et al. Mol Biol Rep, 2007 Dec. PMID 17171436
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • AC111034.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    POTE ankyrin domain family member A
    Names
    gonad specific ankyrin repeat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401513.1 → NP_001388442.1  POTE ankyrin domain family member A isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC111034, AC158566
      Related
      ENSMUSP00000147714.2, ENSMUST00000209669.2

    2. NM_026256.2 → NP_080532.1  POTE ankyrin domain family member A isoform 1

      See identical proteins and their annotated locations for NP_080532.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1, also known as Gsarp1) represents the shortest transcript and encodes the shortest isoform (1).
      Source sequence(s)
      AK015473
      UniProtKB/TrEMBL
      Q9D5D4, Q9D5M0
      Related
      ENSMUST00000211657.2
      Conserved Domains (4) summary
      cd00204
      Location:76 → 200
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:118 → 210
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:199 → 253
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:116 → 144
      ANK; ANK repeat [structural motif]

    3. NM_027618.1 → NP_081894.1  POTE ankyrin domain family member A isoform 2

      See identical proteins and their annotated locations for NP_081894.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2, also known as Gsarp2) differs in the 3' UTR and includes several additional exons in the 3' coding region, compared to variant 1. The resulting isoform (2) is longer and has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AC158566, AK015012
      Consensus CDS
      CCDS52535.1
      UniProtKB/TrEMBL
      A5H0M4, Q9CUQ9
      Related
      ENSMUSP00000080069.5, ENSMUST00000081321.5
      Conserved Domains (4) summary
      cd00204
      Location:76 → 200
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:118 → 210
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:199 → 253
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:116 → 144
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      27937662..28110476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242159.3 → XP_011240461.1  POTE ankyrin domain family member A isoform X1

      Conserved Domains (3) summary
      COG0666
      Location:89 → 281
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:116 → 144
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:85 → 176
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_006509192.4 → XP_006509255.1  POTE ankyrin domain family member A isoform X2

      UniProtKB/TrEMBL
      A0A1B0GS20
      Conserved Domains (3) summary
      COG0666
      Location:89 → 281
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:116 → 144
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:85 → 176
      Ank_2; Ankyrin repeats (3 copies)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033467.1: Suppressed sequence

      Description
      NM_001033467.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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