1: RNMTL1 RNA methyltransferase like 1 [ Homo sapiens ]

GeneID: 55178 updated 3-Dec-2009

[Top][Help]Summary

Official Symbol
RNMTL1provided by HGNC
Official Full Name
RNA methyltransferase like 1provided by HGNC
Primary Source
HGNC:18485
See related
Ensembl:ENSG00000171861; HPRD:15266; MIM:612600
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HC90; FLJ10581; RNMTL1

[Top][Help]Genomic regions, transcripts, and products

(plus) Go to reference sequence detailsTry our new Sequence Viewer


[Top][Help]Genomic context

chromosome: 17; Location: 17p13.3See RNMTL1 in MapViewer

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into Function What's a GeneRIF?

PubMed 1. The ATF/CREB site is the key element for transcription of this protein found on human chromosome 17.

[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
Affinity Capture-MS
  BioGRID:120477   BioGRID:114031   CUL2      BioGRID    PubMed
Affinity Capture-MS
  BioGRID:120477   BioGRID:110968   NTHL1      BioGRID    PubMed
Affinity Capture-MS
  BioGRID:120477   BioGRID:110621   NUDT1      BioGRID    PubMed
Affinity Capture-MS
  BioGRID:120477   BioGRID:116502   PUF60      BioGRID    PubMed
Affinity Capture-MS
  BioGRID:120477   BioGRID:115574   SMNDC1      BioGRID    PubMed
Affinity Capture-MS
  BioGRID:120477   BioGRID:113056   TRIP6      BioGRID    PubMed

[Top][Help]General gene information

Markers

RH91924(e-PCR)
Links: UniSTS:88213
STS-AA030010(e-PCR)
Links: UniSTS:2993

Homology

Homologs of the RNMTL1 gene The RNMTL1 gene is conserved in chimpanzee, dog, cow, mouse, chicken, zebrafish, fruit fly, and mosquito.


Map Viewer (Mouse)

Gene Ontology Provided by GOA

Process Evidence
RNA processing IEA   

[Top][Help]General protein information

Preferred Names
RNA methyltransferase like 1
Names
RNA methyltransferase like 1
putative RNA methyltransferase
NP_060616.1
EC 2.1.1.-

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

  1. NM_018146.2NP_060616.1  RNA methyltransferase like 1

    Source sequence(s)
    AF177344
    Consensus CDS
    CCDS10997.1
    UniProtKB/Swiss-Prot
    Q9HC36
    Related Ensembl
    ENSP00000306080, ENST00000304478
    Conserved Domains (3) summary
    COG0566
    Location:114407
    Blast Score: 344
    SpoU; rRNA methylases [Translation, ribosomal structure and biogenesis]
    pfam08032
    Location:124192
    Blast Score: 123
    SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding
    cl00362
    Location:209400
    Blast Score: 256
    SpoU_methylase; SpoU rRNA Methylase family

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000017.10

    Range
    685512..695740
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NT_010718.16 

    Range
    288886..299114
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000060.1

    Range
    697653..707880
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_926584.1 

    Range
    615149..625376
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000149.1

    Range
    596107..606166
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_001838403.1 

    Range
    287277..297336
    Download
    GenBank FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

  Nucleotide   Protein
  genomic   AC087392.10  (118396..128624)   None
  genomic   CH471108.2   EAW90642.1
  mRNA   AF177344.2   AAG17988.2
  mRNA   AK001443.1   BAA91694.1
  mRNA   AK222900.1   BAD96620.1
  mRNA   AK225128.1   None
  mRNA   BC011550.1   AAH11550.1
  mRNA   BC050614.1   AAH50614.1
  mRNA   CR590735.1   None
  mRNA   CR591937.1   None
  mRNA   CR592397.1   None
  mRNA   CR593905.1   None
  mRNA   CR598330.1   None
  mRNA   CR606252.1   None
  mRNA   CR606431.1   None
  mRNA   CR610396.1   None
  mRNA   CR610400.1   None
  mRNA   CR613251.1   None
  mRNA   CR620136.1   None
  mRNA   CR626293.1   None
  mRNA   CR626756.1   None
Protein Accession   Links
Q9HC36.2   GenPept   UniProtKB/Swiss-Prot:Q9HC36

[Top][Help]Additional Links

Gene LinkOut

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