1: CECR2 cat eye syndrome chromosome region, candidate 2 [ Homo sapiens ]

GeneID: 27443 updated 3-Dec-2009

[Top][Help]Summary

Official Symbol
CECR2provided by HGNC
Official Full Name
cat eye syndrome chromosome region, candidate 2provided by HGNC
Primary Source
HGNC:1840
See related
Ensembl:ENSG00000099954; MIM:607576
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA1740; CECR2
Annotation Information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly

[Top][Help]Genomic regions, transcripts, and products

(plus) Go to reference sequence detailsTry our new Sequence Viewer


[Top][Help]Genomic context

chromosome: 22; Location: 22q11.2See CECR2 in MapViewer

[Top][Help]Bibliography

Related Articles in PubMed

[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
 
  AAK15343.1   Leucine rich PPR motif containing protein   LRPPRC      HPRD    PubMed
 
  AAK15343.1   Ubiquitously expressed transcript protein   UXT      HPRD    PubMed
Two-hybrid
  BioGRID:118176   BioGRID:115432   LRPPRC      BioGRID    PubMed

[Top][Help]General gene information

Markers

SHGC-60699(e-PCR)
Links: UniSTS:46864
D22S420(e-PCR), detects polymorphism
Links: UniSTS:75798
RH1699(e-PCR)
Links: UniSTS:91174
D22S420(e-PCR), detects polymorphism
Links: UniSTS:20268
SHGC-105575(e-PCR)
Links: UniSTS:169357
D22S137(e-PCR)
Links: UniSTS:146575
G18171(e-PCR)
Links: UniSTS:404
SHGC-105082(e-PCR)
Links: UniSTS:169114
D1S3690(e-PCR)
Links: UniSTS:474268
RH98562(e-PCR)
Links: UniSTS:86963
RH120398(e-PCR)
Links: UniSTS:132541
RH65881(e-PCR)
Links: UniSTS:25300

Homology

Homologs of the CECR2 gene The CECR2 gene is conserved in chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, and mosquito.


Map Viewer (Mouse, Rat)

[Top][Help]General protein information

Preferred Names
cat eye syndrome chromosome region, candidate 2
Names
cat eye syndrome chromosome region, candidate 2
NP_113601.2
5` partial

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

  1. NM_031413.3NP_113601.2  cat eye syndrome chromosome region, candidate 2

    Source sequence(s)
    ABBA01001449,AF336133,AK091754,AL832377
    UniProtKB/Swiss-Prot
    Q9BXF3
    Conserved Domains (1) summary
    cd05509
    Location:438538
    Blast Score: 482
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long...

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000022.10

    Range
    17956626..18033844
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NT_011519.10 

    Range
    1108776..1185994
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000065.1

    Range
    1579041..1656269
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_927406.1 

    Range
    912041..989269
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000154.1

    Range
    1668589..1852277, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_001838735.2 

    Range
    628056..811744, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

  Nucleotide   Protein
  genomic   ABBA01001449.1   None
  genomic   AC004019.20  (92345..218933)   None
  mRNA   AB051527.1   BAB21831.1
  mRNA   AF336133.1   AAK15343.1
  mRNA   AF411609.1   AAL07393.1
  mRNA   AK091754.1   None
  mRNA   AK308330.1   None
  mRNA   AL832377.1   CAH56212.1
  mRNA   BX647449.1   CAH56122.1
  other-genetic   BC166664.1   AAI66664.1
Protein Accession   Links
Q9BXF3.2   GenPept   UniProtKB/Swiss-Prot:Q9BXF3

[Top][Help]Additional Links

Gene LinkOut

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