1: APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F [ Homo sapiens ]

GeneID: 200316 updated 4-Dec-2009

[Top][Help]Summary

Official Symbol
APOBEC3Fprovided by HGNC
Official Full Name
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Fprovided by HGNC
Primary Source
HGNC:17356
See related
Ensembl:ENSG00000128394; HPRD:16415; MIM:608993
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KA6; ARP8; MGC74891; BK150C2.4.MRNA; APOBEC3F
Summary
This gene is a member of the cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and functionally related to the C to U RNA-editing cytidine deaminase APOBEC1. It is thought that the proteins may be RNA editing enzymes and have roles in growth or cell cycle control. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq]

[Top][Help]Genomic regions, transcripts, and products

(plus) Go to reference sequence detailsTry our new Sequence Viewer


[Top][Help]Genomic context

chromosome: 22; Location: 22q13.1See APOBEC3F in MapViewer

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into Function What's a GeneRIF?

PubMed 1. When recognition loop of 9-11 amino acids is grafted from the donor APOBEC3F or 3G proteins into the acceptor scaffold of AID, the mutational signature of AID changes toward that of the donor proteins.
PubMed 2. APOBEC3G and APOBEC3F gene expression in immune system and hematopoietic system cells
PubMed 3. Thus, (21)WxSLVK(26) is a novel functional domain that regulates Vif activity toward both APOBEC3F and APOBEC3G and is a potential drug target to inhibit Vif activity and block HIV-1 replication.
PubMed 4. results here have indicated that at least two distinct regions in the N-terminal half of HIV-1 Vif are critical for binding and exclusion of APOBEC3G/F
PubMed 5. relationship between the human immunodeficiency virus type 1 viral infectivity factor (Vif) and the human APOBEC-3G and APOBEC-3F restriction factors [Review]
PubMed 6. analysis of genetic editing of HBV DNA by monodomain human APOBEC3G and F cytidine deaminases
PubMed 7. The Chinese population had a higher frequency of small alleles and showed a difference in allelic structure and frequency distribution in apolipoprotein B from European and American in this populations.
PubMed 8. Distinct determinants in HIV-1 Vif and human APOBEC3 proteins are required for the suppression of diverse host anti-viral proteins.
PubMed 9. The APOBEC3F domain that interacts with the Vif DRMR region was located between amino acids 283 and 300 of A3F.
PubMed 10. A VxIPLx(4-5)LxPhix(2)YWxL motif in HIV-1 Vif is identified, which is required for efficient interaction between Vif and APOBEC3G (A3G), Vif-mediated A3G degradation and virion exclusion, and functional suppression of the A3G antiviral activity.
PubMed 11. define a number of subtle differences between the ribonucleoprotein complexes associated with APOBEC3F and APOBEC3G and speculate
PubMed 12. Studies focused mainly on APOBEC3F imply that it occurs associated with mRNA-PABP1 in translationally active polysomes and to a lesser extent in mRNA processing bodies (P-bodies).
PubMed 13. Vif binding to RNA and DNA offers several non-exclusive ways to counteract APOBEC3G/3F factors, in addition to the well documented Vif-induced degradation by the proteasome and to the Vif-mediated repression of translation of these antiviral factors
PubMed 14. Small interfering RNA-mediated depletion of APOBEC3F, but not TRIM5alpha, enhances HIV-1 infection of immature dendritic cells (iDCs), indicating that APOBEC3F controls the sensitivity of iDCs to HIV-1 infection
PubMed 15. Results reveal two distinct Vif determinants, amino acids Y(40)RHHY(44) and D(14)RMR(17), which are essential for binding to APOBEC3G and APOBEC3F, respectively.
PubMed 16. only the C-terminal domain of APOBEC3F and -3G dictates the retroviral minus strand 5'-TC and 5'-CC dinucleotide hypermutation preferences.
PubMed 17. separation of function of the cytidine deaminase domains is maintained in hA3B and hA3F, but roles of the two domains are reversed in mouse A3
PubMed 18. The fact that several highly conserved tryphtophan residues in Vif are specifically required for the suppression of APOBEC3F (A3F) but not that of APOBEC3G (A3G) suggests a critical role for A3F in the restriction of HIV-1 in vivo.
PubMed 19. APOBEC3F was less potent than APOBEC3G in inhibitinhg HIV-1; Vif proteins appeared more potent & specific when APOBEC3G is the target rather than APOBEC3F
PubMed 20. APOBEC3B and APOBEC3F have roles in inhibiting L1 retrotransposition by a DNA deamination-independent mechanism
PubMed 21. Findings highlight a role for APOBEC3G/3F in explaining the resistance of most dendritic cells to HIV-1 infection, as well as the susceptibility of a fraction of immature dendritic cells.
PubMed 22. APOBEC3F and APOBEC3G complexes undergo dynamic conversion during HIV-1 infection
PubMed 23. novel link between innate immunity against retroviruses and P-bodies suggesting that APOBEC3G and APOBEC3F could function in the context of P-bodies to restrict HIV-1 replication.

[Top][Help]HIV-1 protein interactions

Protein    Interaction
1. Pr55(Gag) APOBEC3F may be incorporated into virions by HIV-1 Gag polyprotein PubMed
2. Vif HIV-1 Vif specifically binds APOBEC3F, and Vif suppresses both the inhibition of virus infectivity caused by APOBEC3F and virion incorporation of APOBEC3F PubMed
3. APOBEC3F, similar to APOBEC3G, induces G to A hypermutations in HIV-1 genomic DNA, and the HIV-1 Vif protein inhibits this activity PubMed
4. Highly conserved Tryptophan residues in the N-terminal region of HIV-1 Vif are required for the suppression of both APOBEC3G and APOBEC3F PubMed
5. HIV-1 Vif, which suppresses both APOBEC3G and APOBEC3F antiviral function by inducing their degradation, may selectively remove these proteins from, and/or restrict their localization to, P-bodies PubMed

Go to the HIV-1, Human Protein Interaction Database

[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
 
  NP_660341.2   NP_068594.1   APOBEC3G      HPRD    PubMed

[Top][Help]General gene information

Markers

L18506(e-PCR)
Links: UniSTS:54024
L17688(e-PCR)
Links: UniSTS:74509
GDB:434012(e-PCR)
Links: UniSTS:157204
D8S2279(e-PCR)
Links: UniSTS:473907
GDB:314949(e-PCR)
Links: UniSTS:156503
L18426(e-PCR)
Links: UniSTS:34648
G38154(e-PCR)
Links: UniSTS:53341
D1S1423(e-PCR)
Links: UniSTS:149619
G18167(e-PCR)
Links: UniSTS:43142
D11S3316(e-PCR)
Links: UniSTS:152558

[Top][Help]General protein information

Preferred Names
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
Names
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
induced upon T-cell activation

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

  1. NM_001006666.1NP_001006667.1  apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F isoform b

    Description
    Transcript Variant: This variant (2) contains a distinct 3' UTR and 3' coding region, compared to variant 1. The resulting isoform (b) is shorter and has a distinct C-terminus when compared to isoform a.
    Source sequence(s)
    BM681311,BQ056344,CR456395
    Consensus CDS
    CCDS33649.1
    UniProtKB/TrEMBL
    Q6ICH3
    UniProtKB/Swiss-Prot
    Q9HC16
    Related Ensembl
    ENSP00000370977, ENST00000381565
    Conserved Domains (1) summary
    cl00269
    Location:1065
    Blast Score: 179
    cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members...
  2. NM_145298.5NP_660341.2  apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F isoform a

    Description
    Transcript Variant: This variant (1) represents the longer transcript, and encodes the longer isoform (a).
    Source sequence(s)
    AL022318,BC038808,BQ182066,CX165430,DA221480
    Consensus CDS
    CCDS33648.1
    UniProtKB/Swiss-Prot
    Q8IUX4
    Related Ensembl
    ENSP00000309749, ENST00000308521
    Conserved Domains (2) summary
    cd01283
    Location:191316
    Blast Score: 143
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...
    pfam05240
    Location:311365
    Blast Score: 235
    APOBEC_C; APOBEC-like C-terminal domain

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000022.10

    Range
    39436672..39451976
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NT_011520.12 

    Range
    18827241..18842545
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000065.1

    Range
    23238708..23254009
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_927628.1 

    Range
    17504902..17520203
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000154.1

    Range
    22404614..22419824
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_001838745.1 

    Range
    17531747..17546957
    Download
    GenBank FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

  Nucleotide   Protein
  genomic   AL022318.2   CAB45274.1
  genomic   CH471095.1   EAW60288.1
       EAW60289.1
  genomic   DQ146365.1   AAZ38720.1
  mRNA   AK294810.1   BAG57929.1
  mRNA   BC038808.1   AAH38808.1
  mRNA   BE888653.1   None
  mRNA   BE892372.1   None
  mRNA   BG280786.1   None
  mRNA   BG744406.1   None
  mRNA   BG758984.1   None
  mRNA   BM681311.1   None
  mRNA   BQ056344.1   None
  mRNA   BQ182066.1   None
  mRNA   BQ941658.1   None
  mRNA   BX367450.1   None
  mRNA   CR456395.1   CAG30281.1
  mRNA   CX165430.1   None
  mRNA   DA221480.1   None
  mRNA   U38435.1   None
  other-genetic   CU012953.1   CAK54384.1
  other-genetic   CU013241.1   CAK54683.1
Protein Accession   Links
Q6ICH3   GenPept   UniProtKB/TrEMBL:Q6ICH3
Q8IUX4.3   GenPept   UniProtKB/Swiss-Prot:Q8IUX4

[Top][Help]Additional Links

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.