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    ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

    Gene ID: 84837, updated on 10-Oct-2023

    Summary

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    Official Symbol
    ARHGAP5-AS1provided by HGNC
    Official Full Name
    ARHGAP5 antisense RNA 1 (head to head)provided by HGNC
    Primary source
    HGNC:HGNC:20279
    See related
    AllianceGenome:HGNC:20279
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C14orf128
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    Genomic context

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    See ARHGAP5-AS1 in Genome Data Viewer
    Location:
    14q12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (32075419..32076699, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (26273042..26274322, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (32544625..32545905, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ZFAND2A pseudogene 2 Neighboring gene MPRA-validated peak2133 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:32489479-32490678 Neighboring gene uncharacterized LOC105370440 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5657 Neighboring gene Sharpr-MPRA regulatory region 9862 Neighboring gene Rho GTPase activating protein 5 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr14:32596327-32597277 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8238 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8239 Neighboring gene RNA, U6 small nuclear 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. N(6) -methyladenosine-modified lncRNA ARHGAP5-AS1 stabilises CSDE1 and coordinates oncogenic RNA regulons in hepatocellular carcinoma. Liu J, et al. Clin Transl Med, 2022 Nov. PMID 36354136, Free PMC Article
    2. Long non-coding RNA ARHGAP5-AS1 inhibits migration of breast cancer cell via stabilizing SMAD7 protein. Wang CL, et al. Breast Cancer Res Treat, 2021 Oct. PMID 34370213, Free PMC Article
    3. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N(6) -methyladenosine-modified lncRNA ARHGAP5-AS1 stabilises CSDE1 and coordinates oncogenic RNA regulons in hepatocellular carcinoma.
      Title: N(6) -methyladenosine-modified lncRNA ARHGAP5-AS1 stabilises CSDE1 and coordinates oncogenic RNA regulons in hepatocellular carcinoma.
    2. Long non-coding RNA ARHGAP5-AS1 inhibits migration of breast cancer cell via stabilizing SMAD7 protein.
      Title: Long non-coding RNA ARHGAP5-AS1 inhibits migration of breast cancer cell via stabilizing SMAD7 protein.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • ARHGAP5 antisense RNA 1 (non-protein coding)

    Clone Names

    • MGC15504

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027263.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI493138, BC007251, BM745256

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      32075419..32076699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      26273042..26274322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_032751.1: Suppressed sequence

      Description
      NM_032751.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96IT6.1 GenPept UniProtKB/Swiss-Prot:Q96IT6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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