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    RWP1 HXXXD-type acyl-transferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834106, updated on 6-Oct-2023

    Summary

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    Gene symbol
    RWP1
    Gene description
    HXXXD-type acyl-transferase family protein
    Primary source
    Araport:AT5G41040
    Locus tag
    AT5G41040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    aliphatic suberin feruloyl-transferase; ASFT; HHT; hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase; MEE6.11; MEE6_11; REDUCED LEVELS OF WALL-BOUND PHENOLICS 1
    Summary
    Encodes a feruloyl-CoA transferase required for suberin synthesis. Has feruloyl-CoA-dependent feruloyl transferase activity towards substrates with a primary alcohol.
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    Genomic context

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    See RWP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (16431304..16433305)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene myb family transcription factor Neighboring gene uncharacterized protein Neighboring gene TCP family transcription factor Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene miscRNA Neighboring gene DHHC-type zinc finger family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis. Gou JY, et al. Proc Natl Acad Sci U S A, 2009 Nov 3. PMID 19846769, Free PMC Article
    2. Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis. Molina I, et al. Plant Physiol, 2009 Nov. PMID 19759341, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The formation of aromatic suberin in Arabidopsis, primarily in seed and root tissues, depends on a member of the acyl-CoA dependent acyltransferase superfamily of enzymes encoded by At5g41040. [HHT]
      Title: A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis.
    2. ASFT is a feruloyl transferase involved in suberin biosynthesis.
      Title: Identification of an Arabidopsis feruloyl-coenzyme A transferase required for suberin synthesis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    NM_123469.2
    NM_180780.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydroxycinnamoyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables omega-hydroxypalmitate O-sinapoyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell wall pectin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within suberin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HXXXD-type acyl-transferase family protein
    NP_568587.2
    • HXXXD-type acyl-transferase family protein; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G63560.1); Has 2973 Blast hits to 2952 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 233; Plants - 2730; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    NP_851111.1
    • HXXXD-type acyl-transferase family protein; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G63560.1); Has 2970 Blast hits to 2949 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 233; Plants - 2727; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16431304..16433305
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180780.2 → NP_851111.1  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851111.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94CD1, Q9FLM5
      UniProtKB/TrEMBL
      A0A178UGL4, A0A5S9YAF1
      Conserved Domains (1) summary
      PLN02481
      Location:24 → 457
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase

    2. NM_123469.2 → NP_568587.2  HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568587.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JWW6
      Conserved Domains (2) summary
      PLN02481
      Location:8 → 441
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase
      pfam02458
      Location:14 → 438
      Transferase; Transferase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94CD1.1

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