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    NF-YB13 nuclear factor Y, subunit B13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832373, updated on 7-Sep-2023

    Summary

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    Gene symbol
    NF-YB13
    Gene description
    nuclear factor Y, subunit B13
    Primary source
    Araport:AT5G23090
    Locus tag
    AT5G23090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; MYJ24.8; MYJ24_8; nuclear factor Y; subunit B13; subunit B13''
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    Genomic context

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    See NF-YB13 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (7749030..7750612)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Thymidine kinase Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    3. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036850.1
    NM_001343789.1
    NM_122215.3
    NM_180729.3
    NM_180730.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor Y, subunit B13
    NP_001031927.1
    • ''nuclear factor Y, subunit B13'' (NF-YB13); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.2); Has 1502 Blast hits to 1502 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 387; Plants - 520; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
    NP_197700.2
    • ''nuclear factor Y, subunit B13'' (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1261 Blast hits to 1261 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 310; Plants - 511; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    NP_851060.1
    • ''nuclear factor Y, subunit B13'' (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1491 Blast hits to 1491 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 374; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
    NP_851061.1
    • ''nuclear factor Y, subunit B13'' (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1491 Blast hits to 1491 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 374; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7749030..7750612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180729.3 → NP_851060.1  nuclear factor Y, subunit B13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851060.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P49592
      UniProtKB/TrEMBL
      A0A178UF16, A0A384KDH6, B9DHA9
      Conserved Domains (1) summary
      cl23735
      Location:8 → 139
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...

    2. NM_180730.3 → NP_851061.1  nuclear factor Y, subunit B13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851061.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P49592
      UniProtKB/TrEMBL
      A0A178UF16, A0A384KDH6, B9DHA9
      Conserved Domains (1) summary
      cl23735
      Location:8 → 139
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...

    3. NM_001036850.1 → NP_001031927.1  nuclear factor Y, subunit B13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031927.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEI9, F4KBG0
      Conserved Domains (1) summary
      cl23735
      Location:8 → 138
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...

    4. NM_001343789.1 → NP_001330452.1  nuclear factor Y, subunit B13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P49592
      UniProtKB/TrEMBL
      A0A178UF16, A0A384KDH6, B9DHA9
      Conserved Domains (1) summary
      cl23735
      Location:8 → 139
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...

    5. NM_122215.3 → NP_197700.2  nuclear factor Y, subunit B13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197700.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KBG1
      Conserved Domains (1) summary
      cl23735
      Location:16 → 126
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49592.1

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