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    AT3G62010 metal ion-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825374, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G62010
    Gene description
    metal ion-binding protein
    Primary source
    Araport:AT3G62010
    Locus tag
    AT3G62010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    19
    Sequence:
    Chromosome: 3; NC_003074.8 (22964534..22971384)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene germin-like protein 10 Neighboring gene rotamase CYP 4 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene Putative endonuclease or glycosyl hydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203229.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    metal ion-binding protein
    NP_001190158.1
    • unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages.
    NP_191760.2
    • unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22964534..22971384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116066.4 → NP_191760.2  metal ion-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191760.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VH50, A0A384L8F5, F4IX22, Q9M264
      Conserved Domains (3) summary
      cd14496
      Location:14 → 313
      PTP_paladin; protein tyrosine phosphatase-like domains of paladin
      pfam14566
      Location:949 → 1107
      PTPlike_phytase; Inositol hexakisphosphate
      cl28904
      Location:872 → 1171
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    2. NM_001203229.1 → NP_001190158.1  metal ion-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190158.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IX23, Q9M264
      Conserved Domains (1) summary
      pfam14566
      Location:505 → 661
      PTPlike_phytase; Inositol hexakisphosphate
    Nucleotide Protein
    Heading Accession and Version

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