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    si:ch211-132p1.2 si:ch211-132p1.2 [ Danio rerio (zebrafish) ]

    Gene ID: 793315, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch211-132p1.2provided by ZNC
    Official Full Name
    si:ch211-132p1.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-869
    See related
    Ensembl:ENSDARG00000079399 AllianceGenome:ZFIN:ZDB-GENE-130530-869
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    f2rl3
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human F2RL3 (F2R like thrombin or trypsin receptor 3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 14
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (36869141..36877458)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (36528991..36535407)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene cathepsin O Neighboring gene ring finger protein 130 Neighboring gene leukocyte cell derived chemotaxin 2, tandem duplicate 1 Neighboring gene leukocyte cell derived chemotaxin 2, tandem duplicate 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    proteinase-activated receptor 4
    Names
    coagulation factor II (thrombin) receptor-like 3
    zmp:0000000866

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      36869141..36877458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009291214.3 → XP_009289489.1  proteinase-activated receptor 4

      See identical proteins and their annotated locations for XP_009289489.1

      UniProtKB/TrEMBL
      A0A8M3AGU0, E7FDD1
      Related
      ENSDARP00000098661.2, ENSDART00000111674.5
      Conserved Domains (1) summary
      pfam00001
      Location:78 → 320
      7tm_1; 7 transmembrane receptor (rhodopsin family)
    Nucleotide Protein Strain
    Heading Accession and Version

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