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    vps9d1 VPS9 domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780322, updated on 5-Mar-2024

    Summary

    Official Symbol
    vps9d1provided by Xenbase
    Official Full Name
    VPS9 domain containing 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1014900
    See related
    Ensembl:ENSXETG00000019845
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c16orf7
    Orthologs
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    Genomic context

    See vps9d1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (59189283..59213210, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (61711813..61735751, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 2-like Neighboring gene uncharacterized LOC100489732 Neighboring gene AFG3-like AAA ATPase 1 Neighboring gene dysbindin (dystrobrevin binding protein 1) domain containing 1

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    VPS9 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079393.1NP_001072861.1  VPS9 domain-containing protein 1

      See identical proteins and their annotated locations for NP_001072861.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123082
      UniProtKB/TrEMBL
      A0A7D9NKH5, Q0IHM4
      Related
      ENSXETP00000042950.5, ENSXETT00000042950.5
      Conserved Domains (1) summary
      pfam02204
      Location:528632
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      59189283..59213210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)