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    tdrd5 tudor domain containing 5 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780220, updated on 5-Mar-2024

    Summary

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    Official Symbol
    tdrd5provided by Xenbase
    Official Full Name
    tudor domain containing 5provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5884032
    See related
    Ensembl:ENSXETG00000029942
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (101361548..101381622, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (91142406..91161841, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene ADAMTS-like protein 2 Neighboring gene uncharacterized LOC101734344 Neighboring gene NPHS2 podocin Neighboring gene axonemal dynein light chain domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC147461

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in P granule organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within P granule organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within germ cell development IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in piRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within siRNA-mediated retrotransposon silencing by heterochromatin formation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within spermatid development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in P granule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in chromatoid body ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in pi-body ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    tudor domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079295.1 → NP_001072763.1  tudor domain-containing protein 5

      See identical proteins and their annotated locations for NP_001072763.1

      Status: PROVISIONAL

      Source sequence(s)
      BC125795
      UniProtKB/Swiss-Prot
      A0JM98
      Conserved Domains (4) summary
      cd04508
      Location:593 → 639
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd09976
      Location:379 → 452
      LOTUS_3_TDRD5; The third LOTUS domain on Tudor-containing protein 5 (TDRD5)
      pfam00567
      Location:531 → 658
      TUDOR; Tudor domain
      cl14879
      Location:3 → 95
      LabA_like_C; C-terminal domain of LabA_like proteins

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      101361548..101381622 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031900265.1 → XP_031756125.1  tudor domain-containing protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A8J1JGJ2
      Conserved Domains (4) summary
      cd09975
      Location:174 → 242
      LOTUS_2_TDRD5; The second LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd09976
      Location:426 → 499
      LOTUS_3_TDRD5; The third LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd09985
      Location:50 → 142
      LOTUS_1_TDRD5; The first LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd20419
      Location:574 → 691
      Tudor_TDRD5; Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins

    2. XM_031900264.1 → XP_031756124.1  tudor domain-containing protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PQ25
      Related
      ENSXETP00000059469.3, ENSXETT00000061891.3
      Conserved Domains (4) summary
      cd09975
      Location:174 → 242
      LOTUS_2_TDRD5; The second LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd09976
      Location:426 → 499
      LOTUS_3_TDRD5; The third LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd09985
      Location:50 → 142
      LOTUS_1_TDRD5; The first LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd20419
      Location:587 → 704
      Tudor_TDRD5; Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins

    3. XM_031900267.1 → XP_031756127.1  tudor domain-containing protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A8J1JE30
      Conserved Domains (4) summary
      cd09976
      Location:379 → 452
      LOTUS_3_TDRD5; The third LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd09985
      Location:3 → 95
      LOTUS_1_TDRD5; The first LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd20419
      Location:540 → 657
      Tudor_TDRD5; Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins
      cl14879
      Location:127 → 195
      LabA_like_C; C-terminal domain of LabA_like proteins

    4. XM_031900266.1 → XP_031756126.1  tudor domain-containing protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A8J1JE30
      Conserved Domains (4) summary
      cd09976
      Location:379 → 452
      LOTUS_3_TDRD5; The third LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd09985
      Location:3 → 95
      LOTUS_1_TDRD5; The first LOTUS domain on Tudor-containing protein 5 (TDRD5)
      cd20419
      Location:540 → 657
      Tudor_TDRD5; Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins
      cl14879
      Location:127 → 195
      LabA_like_C; C-terminal domain of LabA_like proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JM98.1 GenPept UniProtKB/Swiss-Prot:A0JM98

    Gene LinkOut

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