1: CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit [ Homo sapiens ]

GeneID: 775 updated 25-Nov-2009

[Top][Help]Summary

Official Symbol
CACNA1Cprovided by HGNC
Official Full Name
calcium channel, voltage-dependent, L type, alpha 1C subunitprovided by HGNC
Primary Source
HGNC:1390
See related
Ensembl:ENSG00000151067; HPRD:00246; MIM:114205
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TS; CACH2; CACN2; CaV1.2; CCHL1A1; CACNL1A1; MGC120730; CACNA1C
Summary
This gene encodes an alpha-1 subunit of a voltage-dependent calcium channel. Calcium channels mediate the influx of calcium ions into the cell upon membrane polarization. The alpha-1 subunit consists of 24 transmembrane segments and forms the pore through which ions pass into the cell. The calcium channel consists of a complex of alpha-1, alpha-2/delta, beta, and gamma subunits in a 1:1:1:1 ratio. There are multiple isoforms of each of these proteins, either encoded by different genes or the result of alternative splicing of transcripts. The protein encoded by this gene binds to and is inhibited by dihydropyridine. Alternative splicing results in many transcript variants encoding different proteins. [provided by RefSeq]

[Top][Help]Genomic regions, transcripts, and products

(plus) Go to reference sequence detailsTry our new Sequence Viewer


[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into Function What's a GeneRIF?

PubMed 1. We identified a group of markers occurring within the CACNA1C gene (encoding the alpha subunit of the calcium channel Cav1.2).
PubMed 2. L-type calcium channel blockers exert an antiinflammatory effect by suppressing expression of plasminogen receptors on macrophages.
PubMed 3. Overexpression of the intracellular II-III loop domains of Cav1.2 and Cav1.3 can dislodge the corresponding endogenous channels from the lipid raft regions of the membrane in rat insulinoma (INS-1) cells.
PubMed 4. The structural organization of Ca(v)1.2 channels in the plasma membrane depends on the type of Ca(v)beta subunits present.
PubMed 5. Three SNPs in CACNA1D or CACNA1C are genetic polymorphisms conferring sensitivity to the antihypertensive effects of L-type dCCBs in patients with hypertension.
PubMed 6. Coupled and independent contributions of residues in IS6 and IIS6 to activation gating of CaV1.2.
PubMed 7. Report functional properties of the CaV1.2 calcium channel activated by calmodulin in the absence of alpha2delta subunits.
PubMed 8. Ca(V)1.2 channels are shown to be a mixture of monomers/dimers and a point mutation in the pre-IQ region predicted to abolish the coiled-coil structure significantly reduces Ca(2+)-dependent inactivation of heterologously expressed Ca(V)1.2 channels
PubMed 9. Observational study of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)
PubMed 10. Introduction into Ca(v)2.1 of the homologous mutation of Ca(v)1.2 causing the Timothy syndrome questions the role of V421 in the phenotypic definition of P-type Ca(2+) channel.
PubMed 11. activation of the RyR1 signaling cascade by Ca(v)1.2 may be important in the early stages of infection, providing the immune system with a rapid mechanism to initiate an early response
PubMed 12. found further support for the previously reported CACNA1C (alpha 1C subunit of the L-type voltage-gated calcium channel in bipolar disorder
PubMed 13. Sorcin modulates cardiac L-type Ca2+ current by functional interaction with the alpha1C subunit in rabbits.
PubMed 14. CO, a product of heme catabolism by HO-1, directly inhibits alpha1C subunit of the cardiac L-type Ca2+ channel
PubMed 15. Cav1.2 is subject to "denitration".
PubMed 16. Observational study of gene-disease association. (HuGE Navigator)
PubMed 17. Observational study and genome-wide association study of gene-disease association. (HuGE Navigator)
PubMed 18. Coexpression of exogenous CaM (CaM(ex)) with alpha(1C)/alpha(2)delta in COS1 cells in the absence of Ca(v)beta subunits stimulates the plasma membrane targeting of alpha(1C).
PubMed 19. Suggest that the decreased BAY K 8644 effects on Cav1.2 channels in failing cardiac myoyctes is caused by increased basal channel activity.
PubMed 20. study found that the Timothy syndrome mutation powerfully and selectively slows voltage-dependent inactivation while sparing or possibly speeding the kinetics of calcium-dependent inactivation
PubMed 21. Genome-wide association study of gene-disease association. (HuGE Navigator)
PubMed 22. Observational study of gene-environment interaction and pharmacogenomic / toxicogenomic. (HuGE Navigator)
PubMed 23. The COOH terminus of hCa(v)1.2b contains sites for the SH2 and SH3 binding of Src kinase.
PubMed 24. Knckout mice mice exhibit significant impairments in spatial memory when examined 30 days after training.
PubMed 25. a smooth muscle Ca(v)1.2 splice variant has been identified functionally to possess biophysical property that can be linked to enhanced state-dependent block by DHP
PubMed 26. CS(L) modulates Ca2+-channel activity through interacting with the calmodulin-binding site on the C-terminal tail of the Cav1.2 channel.
PubMed 27. Indirect evidence for an impaired src kinase regulation of I (Ca,L) together with an increased phosphatase activity suggests that a complex alteration in the kinase/phosphatase balance leads to I (Ca,L) dysregulation in chronic AF.
PubMed 28. data indicate that gain-of-function mutations of CaV1.2 exons 8 and 8A cause distinct forms of Timothy syndrome
PubMed 29. there are extensive splice variations in the human l-type voltage-gated calcium channel, Cav1.2 alpha1 subunit
PubMed 30. testosterone inhibits currents in a concentration-dependent manner over the physiological range of testosterone concentrations (IC50 34 nM), and is not mimicked by the metabolite 5alpha-androstan-17beta-ol-3-one (DHT), nor by progesterone or estradiol.
PubMed 31. the inhibitory modulation of cardiac Ca2+ channels, present in both alpha(1C) isoforms, is G(q)- and PLC-independent and Ca(2+)-dependent, but only basal levels of Ca(2+) are essential
PubMed 32. Ahnak has a critical role in cardiac Ca(V)1.2 calcium channel function and its beta-adrenergic regulation
PubMed 33. The high-resolution structure of the Ca(2+)/CaM-Ca(V)1.2 IQ domain complex was reported.
PubMed 34. determination of whether the expression of this channel is regulated by different promoters in smooth muscle cells and in heart
PubMed 35. there are multiple residues within the inhibitory domain that are crucial to the inhibitory process as well as to the enhancement of expressed current by intracellular application of proteases
PubMed 36. Ca(2+)-calmodulin assumes a novel conformation when it is part of a complex with the C-terminal tail of the Ca(V)1.2 alpha(1) subunit
PubMed 37. L-type Ca(2+) channels play a critical role in maintaining lower esophageal sphinctor tone.
PubMed 38. Expression of undeleted L-type calcium channel mRNAs correlates with normal testes cadmium and increased sperm count after varicocelectomy
PubMed 39. activation of Ca(2+) conductance and Ca(2+)-dependent inactivation depend on extracellular Ca(2+) and are linked to changes in selectivity
PubMed 40. The activation of p50 and p65 by tumor necrosis factor alpha suppresses the expression of the alpha1C subunit of Cav1.2 channels in human colonic circular smooth muscle cells
PubMed 41. single nucleotide polymorphisms in CANCA1C had significant associations with antihypertensive outcome, combining to yield a positive treatment outcome of less than 15 to 80%
PubMed 42. functional but non-voltage-gated L-type Ca2+ channels are expressed at the plasma membrane in T cells and play a role in the antigen receptor-mediated Ca2+ flux in these cells
PubMed 43. Timothy syndrome results from a Ca(V)1.2 missense mutation. Ca(V)1.2 is expressed in all affected tissues. Functional expression reveals that G406R produces maintained inward Ca(2+) currents by causing loss of voltage-dependent channel inactivation.
PubMed 44. localized changes in cytokine expression generated by inflammation in atherosclerosis affect alternative splicing of the Ca(v)1.2alpha1 gene
PubMed 45. loss-of-function mutations in genes encoding the cardiac L-type calcium channel to be associated with a familial sudden cardiac death syndrome in which a Brugada syndrome phenotype is combined with shorter-than-normal QT intervals
PubMed 46. short splice variants of the human cardiac Cavbeta2 subunit are involved in modulation of the Cav1.2 channel
PubMed 47. the NT and IQ-domains of alpha(1)1.2 mediate functionally distinct interactions with CaBP1 and CaM that promote conformational alterations that either stabilize or inhibit inactivation of Ca(v)1.2.
PubMed 48. voltage-dependent facilitation of the Ca(v)1.2 channel depends on the phosphorylation of Ser1512/Ser1570 by calmodulin kinase II
PubMed 49. cross-talk between the alpha1C C and N termini, beta subunit, and the cytoplasmic pore region confers the multifactorial regulation of Ca(v)1.2 channels
PubMed 50. tissue-secific expression of two isoforms under the control of distinct 5' flanking regulatory elements
PubMed 51. the physicochemical properties of the amino acid residues at positions 1144 and 1152 are crucial to the CaV1.2 pore's ability to distinguish between multiple Ba(2+) ions and Ca(2+) ions
PubMed 52. analysis of conformation and binding of CaV1.2
PubMed 53. new promoter which exhibits 69% homology to its rat counterpart and displays functional promoter activity when transfected into heart cells in culture in luciferase-expressing constructs
PubMed 54. We conclude that Rem is capable of regulating L-type current, that release of Rem block is modulated by cellular kinase pathways, and that the Ca(V)1.2 COOH terminus contributes to Rem-dependent channel inhibition.

[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
 
  Calcium channel, voltage dependent, L type, alpha 1C subunit   NP_000716.2   CACNB3      HPRD    PubMed
 
  Calcium channel, voltage dependent, L type, alpha 1C subunit   NP_536856.2   SLC44A1      HPRD    PubMed
 
  NP_000710.3   AAH30201.1   CABP1      HPRD    PubMed
 
  NP_000710.3   Pterin-4 alpha carbinolamine dehydratase   PCBD1      HPRD    PubMed
 
  NP_000710.3   Ryanodine receptor 2   RYR2      HPRD    PubMed
 
  NP_000710.3   NP_003121.1   SRI      HPRD    PubMed
Cav1.2 interacts with G-beta-1. This interaction was modeled on a demonstrated interaction between Cav1.2 and G-beta-1, both from unspecified species.
  NP_000710.4   NP_002065.1   GNB1      BIND    PubMed
Affinity Capture-Western; Reconstituted Complex
  BioGRID:107229   BioGRID:114863   CABP1      BioGRID    PubMed
Co-crystal Structure
  BioGRID:107229   BioGRID:107238   CACNB3      BioGRID    PubMed
Two-hybrid
  BioGRID:107229   BioGRID:111125   PCBD1      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107229   BioGRID:112174   RYR2      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107229   BioGRID:112595   SRI      BioGRID    PubMed

[Top][Help]General gene information

Markers

D12S1615(e-PCR), detects polymorphism
Links: UniSTS:46089
SHGC-30605(e-PCR)
Links: UniSTS:167690
SHGC-152191(e-PCR)
Links: UniSTS:177429
D12S1392E(e-PCR)
Links: UniSTS:61207
G41239(e-PCR)
Links: UniSTS:50712
G30965(e-PCR)
Links: UniSTS:74777
RH78411(e-PCR)
Links: UniSTS:79900
GDB:214834(e-PCR)
Links: UniSTS:156191
D12S1694(e-PCR), detects polymorphism
Links: UniSTS:7460
SHGC-37464(e-PCR)
Links: UniSTS:51493
D12S100(e-PCR), detects polymorphism
Links: UniSTS:38443
G19668(e-PCR)
Links: UniSTS:35630
A001U36(e-PCR)
Links: UniSTS:35631
D12S2051(e-PCR)
Links: UniSTS:44335
RH44799(e-PCR)
Links: UniSTS:11061
G42621(e-PCR)
Links: UniSTS:94521
G42623(e-PCR)
Links: UniSTS:94523
G42624(e-PCR)
Links: UniSTS:94524
G42625(e-PCR)
Links: UniSTS:94525
G42626(e-PCR)
Links: UniSTS:94526
SHGC-151138(e-PCR)
Links: UniSTS:173375
D12S2049(e-PCR)
Links: UniSTS:25665
D12S100(e-PCR), detects polymorphism
Links: UniSTS:85573
RH121301(e-PCR)
Links: UniSTS:138567
SHGC-106399(e-PCR)
Links: UniSTS:169810
WI-18742(e-PCR)
Links: UniSTS:6995
D12S381E(e-PCR)
Links: UniSTS:148563
RH25054(e-PCR)
Links: UniSTS:88149
D12S1096(e-PCR)
Links: UniSTS:19543
RH48669(e-PCR)
Links: UniSTS:64348
RH27134(e-PCR)
Links: UniSTS:91748
D12S1094(e-PCR)
Links: UniSTS:29796
D12S1117(e-PCR)
Links: UniSTS:49778
D12S100(e-PCR), detects polymorphism
Links: UniSTS:68481
WI-3910(e-PCR)
Links: UniSTS:64393
D12S1076(e-PCR)
Links: UniSTS:77451
SHGC-6998(e-PCR)
Links: UniSTS:50829
D12S2044(e-PCR)
Links: UniSTS:73615
D12S1443(e-PCR)
Links: UniSTS:24720
SHGC-83797(e-PCR)
Links: UniSTS:101781
NoName(e-PCR)
Links: UniSTS:485794
SHGC-132840(e-PCR)
Links: UniSTS:170920
D12S1108(e-PCR)
Links: UniSTS:150201
D12S1689(e-PCR)
Links: UniSTS:10171
D12S1116(e-PCR)
Links: UniSTS:150203
STS-H29303(e-PCR)
Links: UniSTS:10172
D12S1113(e-PCR)
Links: UniSTS:49347
RH93423(e-PCR)
Links: UniSTS:88773
RH102646(e-PCR)
Links: UniSTS:96980
SHGC-57441(e-PCR)
Links: UniSTS:26073
D12S1092(e-PCR)
Links: UniSTS:54245
RH44512(e-PCR)
Links: UniSTS:15336
SHGC-150871(e-PCR)
Links: UniSTS:173544
G17659(e-PCR)
Links: UniSTS:81150

Phenotypes

Brugada syndrome 3
MIM: 611875
Timothy syndrome
MIM: 601005
A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose
NHGRI GWA Catalog
Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder
NHGRI GWA Catalog

Homology

Homologs of the CACNA1C gene The CACNA1C gene is conserved in dog, cow, mouse, rat, chicken, and zebrafish.

Pathways

KEGG pathway: Alzheimer's disease
05010
KEGG pathway: Arrhythmogenic right ventricular cardiomyopathy (ARVC)
05412
KEGG pathway: Calcium signaling pathway
04020
KEGG pathway: Cardiac muscle contraction
04260
KEGG pathway: Dilated cardiomyopathy
05414
KEGG pathway: GnRH signaling pathway
04912
KEGG pathway: Hypertrophic cardiomyopathy (HCM)
05410
KEGG pathway: Long-term potentiation
04720
KEGG pathway: MAPK signaling pathway
04010
KEGG pathway: Type II diabetes mellitus
04930
KEGG pathway: Vascular smooth muscle contraction
04270
Reactome Event:Diabetes pathways
REACT_15380
Reactome Event:Integration of energy metabolism
REACT_1505

[Top][Help]General protein information

Preferred Names
calcium channel, voltage-dependent, L type, alpha 1C subunit
Names
calcium channel, voltage-dependent, L type, alpha 1C subunit
OTTHUMP00000196730
OTTHUMP00000196731
OTTHUMP00000196732
OTTHUMP00000196733
OTTHUMP00000196734
OTTHUMP00000196735
OTTHUMP00000196736
OTTHUMP00000196737
OTTHUMP00000196739
OTTHUMP00000196744
OTTHUMP00000196746
OTTHUMP00000196747
OTTHUMP00000196748
OTTHUMP00000196749
OTTHUMP00000196751
DHPR, alpha-1 subunit
voltage-gated calcium channel alpha subunit Cav1.2
calcium channel, cardic dihydropyridine-sensitive, alpha-1 subunit
calcium channel, L type, alpha 1 polypeptide, isoform 1, cardic muscle
voltage-gated L-type calcium channel Cav1.2 alpha 1 subunit, splice variant 10*
NP_000710.5
5` partial
NP_001123299.1
5` partial
NP_001123301.1
5` partial
NP_001123302.1
5` partial
NP_001123303.1
5` partial
NP_001123304.1
5` partial
NP_001123305.1
5` partial
NP_001123306.1
5` partial
NP_001123307.1
5` partial
NP_001123308.1
5` partial
NP_001123309.1
5` partial
NP_001123310.1
5` partial
NP_001123311.1
5` partial
NP_001123313.1
5` partial
NP_001123314.1
5` partial
NP_001123315.1
5` partial
NP_001123318.1
5` partial
NP_955630.2
5` partial

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

Genomic

  1. NG_008801.1 RefSeqGene

    Range
    5000..649699
    Download
    GenBank FASTA Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_000719.6NP_000710.5  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 18

    Description
    Transcript Variant: This variant (18), also referred to as HLCC70, lacks three alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 18), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34810
    Consensus CDS
    CCDS44794.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 474
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 148
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  2. NM_001129827.1NP_001123299.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 2

    Description
    Transcript Variant: This variant (2), also referred to as HLCC90, lacks an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34821
    Consensus CDS
    CCDS44788.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12731523
    Blast Score: 460
    Ion_trans; Ion transport protein
    pfam08016
    Location:12661528
    Blast Score: 144
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16591690
    Blast Score: 182
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  3. NM_001129829.1NP_001123301.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 3

    Description
    Transcript Variant: This variant (3), also referred to as HLCC126, lacks three alternate in-frame exons and uses two alternate in-frame splice sites in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 3), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,AY830713
    Consensus CDS
    CCDS44792.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:162404
    Blast Score: 458
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461502
    Blast Score: 138
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16521683
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  4. NM_001129830.1NP_001123302.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 4

    Description
    Transcript Variant: This variant (4), also referred to as HLCC85, lacks two alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 4), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34822
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 478
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 149
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  5. NM_001129831.1NP_001123303.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 5

    Description
    Transcript Variant: This variant (5), also referred to as HLCC88, lacks two alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 5), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34819
    Consensus CDS
    CCDS44790.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531503
    Blast Score: 462
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461508
    Blast Score: 145
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16391670
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  6. NM_001129832.1NP_001123304.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 6

    Description
    Transcript Variant: This variant (6), also referred to as HLCC87, lacks two alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 6), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34818
    Consensus CDS
    CCDS44789.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12731495
    Blast Score: 471
    Ion_trans; Ion transport protein
    pfam08016
    Location:12661500
    Blast Score: 147
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16311662
    Blast Score: 182
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  7. NM_001129833.1NP_001123305.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 7

    Description
    Transcript Variant: This variant (7), also referred to has HLCC127, lacks three alternate in-frame exons and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 7), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,AY830712
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 496
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 142
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16301661
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  8. NM_001129834.1NP_001123306.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 8

    Description
    Transcript Variant: This variant (8), also referred to as HLCC71, lacks three alternate in-frame exons and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 8), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34811
    Consensus CDS
    CCDS44793.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 477
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 148
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16301661
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  9. NM_001129835.1NP_001123307.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 9

    Description
    Transcript Variant: This variant (9), also referred to has HLCC72, lacks three alternate in-frame exons and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 9), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z74996
    Consensus CDS
    CCDS44799.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 478
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 149
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16301661
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  10. NM_001129836.1NP_001123308.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 10

    Description
    Transcript Variant: This variant (10), also referred to has HLCC89, lacks three alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 10), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34820
    Consensus CDS
    CCDS44797.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531492
    Blast Score: 474
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461497
    Blast Score: 148
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16281659
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  11. NM_001129837.1NP_001123309.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 11

    Description
    Transcript Variant: This variant (11), also referred to as HLCC73, lacks four alternate in-frame exons and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 11), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34812
    Consensus CDS
    CCDS44795.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531464
    Blast Score: 486
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461469
    Blast Score: 149
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16191650
    Blast Score: 182
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  12. NM_001129838.1NP_001123310.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 12

    Description
    Transcript Variant: This variant (12), also referred to has HLCC74, lacks four alternate in-frame exons and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 12), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34813
    Consensus CDS
    CCDS44801.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531464
    Blast Score: 488
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461469
    Blast Score: 149
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16191650
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  13. NM_001129839.1NP_001123311.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoforom 13

    Description
    Transcript Variant: This variant (13), also referred to has HLCC125, lacks four alternate in-frame exons and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 13), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,AY830711
    Consensus CDS
    CCDS44796.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531462
    Blast Score: 485
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461467
    Blast Score: 145
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16171648
    Blast Score: 182
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  14. NM_001129840.1NP_001123312.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 14

    Description
    Transcript Variant: This variant (14), also referred to has HLCC105, lacks four alternate in-frame exons and contains an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform 14), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,AJ224873
    Consensus CDS
    CCDS44787.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 475
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 148
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  15. NM_001129841.1NP_001123313.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 15

    Description
    Transcript Variant: This variant (15), also referred to has HLCC69, lacks three alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 15), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34809
    Consensus CDS
    CCDS44798.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 494
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 142
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  16. NM_001129842.1NP_001123314.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 16

    Description
    Transcript Variant: This variant (16), also referred to has HLCC78, lacks three alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 16), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34816
    Consensus CDS
    CCDS44791.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 492
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 141
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 182
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  17. NM_001129843.1NP_001123315.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 17

    Description
    Transcript Variant: This variant (17), also referred to has HLCC77, lacks three alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 17), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34815
    Consensus CDS
    CCDS44800.1
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 475
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 148
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  18. NM_001129844.1NP_001123316.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 19

    Description
    Transcript Variant: This variant (19) lacks three alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 19), compared to isoform 1.
    Source sequence(s)
    AC005342,AC005866,AC007618,BC146846
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12501472
    Blast Score: 492
    Ion_trans; Ion transport protein
    pfam08016
    Location:12431477
    Blast Score: 141
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16081639
    Blast Score: 182
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  19. NM_001129846.1NP_001123318.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 20

    Description
    Transcript Variant: This variant (20), also referred to as HLCC76, lacks four alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform 20), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,Z34814
    UniProtKB/Swiss-Prot
    Q13936
    Conserved Domains (3) summary
    pfam00520
    Location:12531464
    Blast Score: 485
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461469
    Blast Score: 148
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16001631
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  20. NM_001167623.1NP_001161095.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 21

    Description
    Transcript Variant: This variant (21) lacks four alternate in-frame exons and contains another alternate in-frame exon compared to variant 1, resulting in a shorter protein (isoform 21), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,AF465484,L29536,Z34816
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 492
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 141
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 182
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  21. NM_001167624.1NP_001161096.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 22

    Description
    Transcript Variant: This variant (22) lacks two alternate in-frame exons and contains another alternate in-frame exon compared to variant 1, resulting in a shorter protein (isoform 22), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,AF465484,L29534,Z34816
    Conserved Domains (3) summary
    pfam00520
    Location:12531475
    Blast Score: 495
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461480
    Blast Score: 142
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16111642
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  22. NM_001167625.1NP_001161097.1  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 23

    Description
    Transcript Variant: This variant (23) lacks five alternate in-frame exons and contains another two alternate in-frame exons compared to variant 1, resulting in a shorter protein (isoform 23), compared to isoform 1.
    Source sequence(s)
    AC005342,AC007618,AF465484,L29529,Z34814
    Conserved Domains (3) summary
    pfam00520
    Location:12531464
    Blast Score: 488
    Ion_trans; Ion transport protein
    pfam08016
    Location:12461469
    Blast Score: 149
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16001631
    Blast Score: 184
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
  23. NM_199460.2NP_955630.2  calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 1

    Description
    Transcript Variant: This variant (1), also referred to as HFCC, encodes the longest isoform (1).
    Source sequence(s)
    AC007618,M92269
    Conserved Domains (3) summary
    pfam00520
    Location:12731523
    Blast Score: 463
    Ion_trans; Ion transport protein
    pfam08016
    Location:12661528
    Blast Score: 145
    PKD_channel; Polycystin cation channel
    pfam08763
    Location:16591690
    Blast Score: 183
    Ca_chan_IQ; Voltage gated calcium channel IQ domain

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000012.11

    Range
    2162415..2807114
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NT_009759.16 

    Range
    2102415..2747114
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000055.1

    Range
    3770101..4421673
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_921949.1 

    Range
    0..4674
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  3. NW_923168.1 

    Range
    0..2692
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  4. NW_925295.1 

    Range
    1973683..2625255
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000144.1

    Range
    2016425..2664553, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_001838049.2 

    Range
    2780121..3428249, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

  Nucleotide   Protein
  genomic   AC005293.1  (2..143125)   None
  genomic   AC005342.1  (177612..220255)   None
  genomic   AC005344.1  (306..153835)   None
  genomic   AC005414.2  (203..109369)   None
  genomic   AC005866.4   None
  genomic   AC006051.1   None
  genomic   AC007618.21  (5781..40875)   None
  genomic   CH471116.2   EAW88895.1
       EAW88896.1
       EAW88897.1
       EAW88898.1
       EAW88899.1
       EAW88900.1
       EAW88901.1
       EAW88902.1
       EAW88903.1
       EAW88904.1
       EAW88905.1
       EAW88906.1
       EAW88907.1
       EAW88908.1
       EAW88909.1
       EAW88910.1
  genomic   L04568.1   AAA02500.2
  genomic   M61130.1   AAA58409.1
  genomic   M91370.1   AAA74590.1
  genomic   M92269.1   AAA17030.1
  genomic   Z26257.1   None
  genomic   Z26308.1   None
  mRNA   AB209016.1   BAD92253.1
  mRNA   AF070589.1   AAC28649.1
  mRNA   AF465484.1   AAM70049.1
  mRNA   AJ224873.1   CAA12174.1
  mRNA   AJ536834.1   CAD61168.1
  mRNA   AJ537510.1   CAD61169.1
  mRNA   AK092125.1   None
  mRNA   AK302698.1   BAH13781.1
  mRNA   AK308652.1   None
  mRNA   AK309111.1   None
  mRNA   AY129012.1   AAM98755.1
  mRNA   AY562395.1   AAT67986.1
  mRNA   AY562396.1   AAT67987.1
  mRNA   AY830711.1   AAX37354.1
  mRNA   AY830712.1   AAX37355.1
  mRNA   AY830713.1   AAX37356.1
  mRNA   BC093695.1   AAH93695.1
  mRNA   BC146846.1   AAI46847.1
  mRNA   CR605077.1   None
  mRNA   L29529.1   AAA51899.1
  mRNA   L29534.1   AAA51900.1
  mRNA   L29536.1   AAA51901.1
  mRNA   M57971.1   AAA62832.1
  mRNA   M57972.1   AAB59461.1
  mRNA   Z26294.1   CAA81218.1
  mRNA   Z26295.1   CAA81219.1
  mRNA   Z34809.1   CAA84340.1
  mRNA   Z34810.1   CAA84341.1
  mRNA   Z34811.1   CAA84342.1
  mRNA   Z34812.1   CAA84343.1
  mRNA   Z34813.1   CAA84344.1
  mRNA   Z34814.1   CAA84345.1
  mRNA   Z34815.1   CAA84346.1
  mRNA   Z34816.1   CAA84347.1
  mRNA   Z34817.1   CAA84348.1
  mRNA   Z34818.1   CAA84349.1
  mRNA   Z34819.1   CAA84350.1
  mRNA   Z34820.1   CAA84351.1
  mRNA   Z34821.1   CAA84352.1
  mRNA   Z34822.1   CAA84353.1
  mRNA   Z74996.1   CAA99284.1
Protein Accession   Links
O95234   GenPept   UniProtKB/TrEMBL:O95234
Q13936.3   GenPept   UniProtKB/Swiss-Prot:Q13936
Q4G0H8   GenPept   UniProtKB/TrEMBL:Q4G0H8
Q59GU3   GenPept   UniProtKB/TrEMBL:Q59GU3
Q5V9X8   GenPept   UniProtKB/TrEMBL:Q5V9X8
Q5V9X9   GenPept   UniProtKB/TrEMBL:Q5V9X9
Q6YL47   GenPept   UniProtKB/TrEMBL:Q6YL47
Q86XX0   GenPept   UniProtKB/TrEMBL:Q86XX0
Q86XX1   GenPept   UniProtKB/TrEMBL:Q86XX1

[Top][Help]Additional Links

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.