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    avl9 AVL9 homolog (S. cerevisiase) [ Danio rerio (zebrafish) ]

    Gene ID: 751682, updated on 27-Mar-2024

    Summary

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    Official Symbol
    avl9provided by ZNC
    Official Full Name
    AVL9 homolog (S. cerevisiase)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060825-261
    See related
    Ensembl:ENSDARG00000055538 AllianceGenome:ZFIN:ZDB-GENE-060825-261
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153609
    Summary
    Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See avl9 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (14166036..14211317, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (14127735..14172990, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene bucky ball 2-like Neighboring gene kelch repeat and BTB (POZ) domain containing 2 Neighboring gene uncharacterized LOC110440141 Neighboring gene mitochondrial tRNA translation optimization 1 Neighboring gene uncharacterized LOC110440140

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Multiplicity of Buc copies in Atlantic salmon contrasts with loss of the germ cell determinant in primates, rodents and axolotl. Škugor A, et al. BMC Evol Biol, 2016 Oct 26. PMID 27784263, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC153609

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in recycling endosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    late secretory pathway protein AVL9 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045565.2 → NP_001039030.2  late secretory pathway protein AVL9 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      CU652698
      UniProtKB/TrEMBL
      A0A8M1NB59, F1R8S1
      Related
      ENSDARP00000072369.3, ENSDART00000077903.6

    2. NM_001327830.1 → NP_001314759.1  late secretory pathway protein AVL9 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      CU652698
      UniProtKB/TrEMBL
      A0A0R4IRC7, A0A8M1P335
      Related
      ENSDARP00000137083.1, ENSDART00000158399.2
      Conserved Domains (3) summary
      pfam07792
      Location:10 → 72
      Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
      pfam09794
      Location:10 → 493
      Avl9; Transport protein Avl9
      cl11519
      Location:110 → 220
      DENN; DENN (AEX-3) domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      14166036..14211317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480162.1 → XP_021335837.1  late secretory pathway protein AVL9 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M9PWI9
      Conserved Domains (1) summary
      cl26605
      Location:10 → 338
      Avl9; Transport protein Avl9
    Nucleotide Protein Strain
    Heading Accession and Version

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